BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0094.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312643|ref|YP_003776735.1| Zn-dependent protease with chap...   231   4e-62

>gi|300312643|ref|YP_003776735.1| Zn-dependent protease with
           chaperone function transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score =  231 bits (588), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 131/232 (56%), Positives = 153/232 (65%), Gaps = 41/232 (17%)

Query: 1   MQVAAFYFDGKTSRRHAVTLDVADGVATISGEAERVCPIIQLRVSERLNRAARKVX---- 56
           M V A Y+DG+TSRRH VTL+V  GVA + GE ER CPI QLRVSER  RAARKV     
Sbjct: 1   MSVLASYYDGRTSRRHQVTLEVVAGVAQVRGEIERDCPIGQLRVSERFARAARKVSFPDG 60

Query: 57  -------AAA------------TLVAVL------------------ALGYLYLLPLAAEV 79
                   AA            +LV  L                   L Y+YLLPLAA+ 
Sbjct: 61  AYLEIIDGAAFRELLQETGHQDSLVVRLQQSWRHALAACAVLVAVVVLSYVYLLPLAAQG 120

Query: 80  VARSLPISVEQRIGDGALDFLDDHILLPTQLPAARRTAITTRFRALTAEVEGVPHYEIVF 139
           +A +LP++V+++IG G L+FLD H+L P+QL A R  AIT RFRALTA +   P Y+IVF
Sbjct: 121 IAATLPVAVDRQIGQGTLEFLDQHVLAPSQLDARRTQAITARFRALTAPLPDAPDYQIVF 180

Query: 140 RKSRIGPNALALPSGQIVLTDEIVTLLDDDDAVMGVLAHELGHVHRRHLXKR 191
           RKSRIGPNA ALPSGQIV+TDEIV LLDDDDA+MGVLAHELGHVHRRHL +R
Sbjct: 181 RKSRIGPNAFALPSGQIVVTDEIVRLLDDDDALMGVLAHELGHVHRRHLMRR 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 445,874
Number of extensions: 13100
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)