BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0090.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310917|ref|YP_003775009.1| hypothetical protein Hsero_1588...   288   3e-79

>gi|300310917|ref|YP_003775009.1| hypothetical protein Hsero_1588
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  288 bits (737), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/235 (63%), Positives = 179/235 (76%), Gaps = 5/235 (2%)

Query: 4   PKNEPTLSAEIFPDRQLITLSCMLALLIAAISXPAISWFALSAQTDITIDRLLDRGMTVM 63
           P++  + +  ++P+R+  + +  LA LIA+IS     WFA  AQTDITI RLL RG  V+
Sbjct: 9   PESLDSFAERLYPERRQSSAARALACLIASIS-----WFAFVAQTDITISRLLARGGGVL 63

Query: 64  DGIERLTSYLTNLTILLSAVGFSALALPGTNPASRFFRKPQVITAVVAYMIFVGIAYNLL 123
           DG++RLT YLTNLTIL+SA+ F++LAL    P SRFFR+P VITAVV Y+ FVGIAYNLL
Sbjct: 64  DGLDRLTMYLTNLTILMSALCFTSLALSLKTPLSRFFRQPAVITAVVTYLAFVGIAYNLL 123

Query: 124 LRQLWQPTGFRALVNESLHTVTPLLALVYWIFFVPRFQPSLKKCLLWLVYPLGYLSITLW 183
           LRQLW PTGFRALVNESLHTV PLLA+VYWIFFVP FQ S +K LLWL YPLGYL ITLW
Sbjct: 124 LRQLWTPTGFRALVNESLHTVVPLLAIVYWIFFVPVFQASWRKALLWLAYPLGYLFITLW 183

Query: 184 RGGSSGFYPYPFINVRDLGYPHVLLNATGLFTGFLVLMGLLLIINNAGKNLLLRR 238
           RG  SGFYPYPFI+V  LGY  V +NA+ L  GFL LM L + +N +GK +LLR+
Sbjct: 184 RGALSGFYPYPFIDVNALGYLRVAVNASLLLVGFLGLMALFIAVNRSGKPVLLRK 238


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.143    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 718,907
Number of extensions: 29029
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)