BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0089.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311794|ref|YP_003775886.1| TetR family transcription regul...   245   2e-66

>gi|300311794|ref|YP_003775886.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  245 bits (626), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 146/191 (76%)

Query: 1   MPDPATGRRRNPATHDAILDATCVLLDEIGFDKLSLEGVAARAGVGKATIYRWWPNKSSL 60
           + DPATGRRRN  +HDAILDAT V+L+EIGFDKLSLEGVAARAGVGKATIYRWWPNKS+L
Sbjct: 42  ISDPATGRRRNAVSHDAILDATYVMLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSAL 101

Query: 61  AMEALLREVGPNVAFPETESARHDIENQIRKLAKLYRGKTGRVVCEMIGLSQFDAETMRL 120
           AMEALLR V P     ++ S+R DIE  + +L++L RGK+GRVV EMI L+QF+ E+ R+
Sbjct: 102 AMEALLRAVEPMPPIGDSGSSRTDIELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRI 161

Query: 121 FNDNYLDPRRNAAKQVLLRGIQNGEFKPDLDFDVIFDLLYGPIIQRMLMRHAGIDERHID 180
           FNDNYL+PRR A   VL RG Q GEF+ D D  ++FDLLY P++QR+L     IDER + 
Sbjct: 162 FNDNYLEPRRLALVSVLRRGAQRGEFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQ 221

Query: 181 LHVALVLDGIT 191
             + LVL  IT
Sbjct: 222 AQLKLVLGSIT 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,003
Number of extensions: 25420
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)