BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0084.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide re...   277   5e-76
gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide re...   173   9e-45

>gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  277 bits (709), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 137/199 (68%), Positives = 160/199 (80%), Gaps = 4/199 (2%)

Query: 33  IPPP--KSAPANNAATETVVLAGGCFWGVQAVFQHTLGVTSAVSGYAGGAKETARYEMVG 90
           +P P  K+  A +A TET+VLAGGCFWGVQ VFQHT GV  AVSGYAGG  +TA Y MV 
Sbjct: 30  VPAPVGKALLAASAPTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVS 89

Query: 91  SGSTGHAESVKVTFDPRKVSYGKILQIYFSVVHDPTQLNRQGPDSGTQYRSAIFYQSDEQ 150
           SGSTGHAE+V+VT+DPRK+S+G++LQIYFSV HDPTQLNRQGPD GTQYRSAIF  +++Q
Sbjct: 90  SGSTGHAEAVQVTYDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQ 149

Query: 151 KRVAADYIAQLDAAKIYPARIVTQLTPLAPTAFYAAEDYHQDFATLHPTQGYIARFDLPK 210
           K  A  YIAQL+AAK+Y A IVTQ+T L    FYAAEDYHQD+ATLHP Q YIA  DLPK
Sbjct: 150 KEAAQAYIAQLNAAKVYGAPIVTQVTAL--QGFYAAEDYHQDYATLHPNQPYIAYNDLPK 207

Query: 211 IENFKQMFPSDYRAAPVLV 229
           I N ++M+P+ YRA PVLV
Sbjct: 208 IGNLQKMYPALYRADPVLV 226


>gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide
           reductase MsrA protein [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  173 bits (439), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 115/174 (66%), Gaps = 5/174 (2%)

Query: 45  ATETVVLAGGCFWGVQAVFQHTLGVTSAVSGYAGGAKETARYEMVGSGSTGHAESVKVTF 104
           A E  VL GGCFW ++AV+Q   GV S  SGY GG+     YE V  G TGHAE VK+ F
Sbjct: 8   AKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLAF 67

Query: 105 DPRKVSYGKILQIYFSVVHDPTQLNRQGPDSGTQYRSAIFYQSDEQKRVAADYIAQLDAA 164
           DP+++SY ++L+I+F+ +HDPT LNRQG D GTQYRS I+YQ + Q   A   IA++  A
Sbjct: 68  DPQQISYRELLEIFFT-IHDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEM--A 124

Query: 165 KIYPARIVTQLTPLAPTAFYAAEDYHQDFATLHPTQGYIARFDLPKIENFKQMF 218
            ++ A IVT+L+P  P  +Y AEDYHQ++   HP QGY A    PK+   +++F
Sbjct: 125 LVWDAPIVTELSP--PQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVF 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 667,882
Number of extensions: 24153
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)