BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0083.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312354|ref|YP_003776446.1| sulfite oxidase transmembrane s...   266   9e-73

>gi|300312354|ref|YP_003776446.1| sulfite oxidase transmembrane
           subunit YedZ protein [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  266 bits (681), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 131/187 (70%), Positives = 151/187 (80%)

Query: 7   LLFVLALLPLARLVAFGFLGRLGANPIEFITRNTGDWALYFLCITLAVTPLRKLIRWNWL 66
           L   LA LPL RLV  GF G LGANP+EFIT +TGDW LY  C+TLAVTPLRKL   NWL
Sbjct: 22  LFLALACLPLLRLVILGFTGGLGANPLEFITHSTGDWTLYLFCLTLAVTPLRKLTGLNWL 81

Query: 67  VRLRRMLGLYAFFYVALHFTIFFWLDHFFDMQEMWADIVKRPFITVGVLAFALLIPLAIT 126
           VR+RRMLGL AFFY+ LHFT F W DHFFD+ E+W DI+KRPFITVGV+A  L IPLA+T
Sbjct: 82  VRMRRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDILKRPFITVGVIALLLSIPLALT 141

Query: 127 STNGMVRRLGGKRWQWLHRLTYVIVPLGVLHFWWVKAGKNLLAQPILFSAIVALLLLARV 186
           STNGMVRRLGGKRWQ LHRL Y+IVPLGVLH+WW KAGKNL+AQP+LF+ +V L+L+ R+
Sbjct: 142 STNGMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAGKNLIAQPLLFAVLVGLMLVLRL 201

Query: 187 LSEKNRE 193
           +  K R 
Sbjct: 202 VWRKGRA 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.145    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 650,795
Number of extensions: 25758
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 128 (53.9 bits)