BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0080.p
         (96 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance ...   188   7e-50
gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z...   128   1e-31
gi|300311799|ref|YP_003775891.1| two component heavy metal respo...   123   3e-30

>gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two
           component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 223

 Score =  188 bits (477), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 88/96 (91%), Positives = 94/96 (97%)

Query: 1   VADLQLDHVRHKVTRQGVNIVLTNKEFLLLHLLIKRQGEALSRSVIASQVWDMNFDSDTN 60
           +ADLQLDHVRHKVTRQGVNI LTNKEF+LLHLLIKRQGEALSRSVIASQ+WDMNFDSDTN
Sbjct: 128 IADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDMNFDSDTN 187

Query: 61  VVDVAVKRLRAKIDAPFEKKLIHTVRSIGYMFSETP 96
           VVDVA+KRLRAKIDAPF+KKLIHTVRS+GYMFSE P
Sbjct: 188 VVDVAIKRLRAKIDAPFDKKLIHTVRSVGYMFSEEP 223


>gi|300309361|ref|YP_003773453.1| response regulator for
           cobalt/zinc/cadmium resistance transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  128 bits (321), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 73/90 (81%)

Query: 3   DLQLDHVRHKVTRQGVNIVLTNKEFLLLHLLIKRQGEALSRSVIASQVWDMNFDSDTNVV 62
           D+ LD +R KVTR G  I LT KEF LLH+LI+R GE LSR  IASQVWDMNFDSDTNVV
Sbjct: 130 DVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDMNFDSDTNVV 189

Query: 63  DVAVKRLRAKIDAPFEKKLIHTVRSIGYMF 92
           DVAV+RLRAK+D  FEKKL+HTV  +GY+F
Sbjct: 190 DVAVRRLRAKLDEGFEKKLLHTVWGMGYVF 219


>gi|300311799|ref|YP_003775891.1| two component heavy metal response
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 230

 Score =  123 bits (308), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 73/93 (78%)

Query: 1   VADLQLDHVRHKVTRQGVNIVLTNKEFLLLHLLIKRQGEALSRSVIASQVWDMNFDSDTN 60
           + DLQ+D +  K  R G+ I LT KEF LL ++ +RQGE LS++ IA  VWDMNFDS+TN
Sbjct: 128 IGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDMNFDSNTN 187

Query: 61  VVDVAVKRLRAKIDAPFEKKLIHTVRSIGYMFS 93
           VV+VA+KRLRAKIDAPFE+KL+HTVR +GY+  
Sbjct: 188 VVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 243,345
Number of extensions: 7181
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 1,619,870
Length adjustment: 65
Effective length of query: 31
Effective length of database: 1,312,095
Effective search space: 40674945
Effective search space used: 40674945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)