BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0078.p (566 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 394 e-111 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 266 4e-72 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 256 3e-69 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 138 1e-33 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 394 bits (1012), Expect = e-111, Method: Compositional matrix adjust. Identities = 257/562 (45%), Positives = 330/562 (58%), Gaps = 18/562 (3%) Query: 1 MNNNDALAQAYLFFQHGQLEAAHAILQPLAQQAEADFNLLHLAGAVAAGLQLHAQAIELY 60 MN D L A F A A+L L D + LHL G+VAA A+A + Sbjct: 1 MNPTDTLKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAW 60 Query: 61 RRALALTPGD----LAVSYKLGRVLYEAGKHQEALSLYLQLIAAGVQHADIFHAAALLLQ 116 ++AL L P D LA+ Y+LGR YE G+ ++A LY +LI +G Q ++F AAA LQ Sbjct: 61 QQALRLLPPDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQ 120 Query: 117 DFN----RNEEALQTIEHALRLAPQNPDAWHRHGVLLQRLQRPGDALQSLQQAVALAPEQ 172 + + +AL +E AL+ P D WHR L +R ++ A Q + QA+ L ++ Sbjct: 121 GMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQR 180 Query: 173 TVYRFDQALLQYELHRNEEALASVDQVLAQEPDFGDGWVCRAATLGRLRRYEESITAARK 232 Y L+++ + EEAL DQ L P+ D V R TL RLR++EE+I + R+ Sbjct: 181 AQYWLAAGLVEHAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRR 240 Query: 233 ALSLRAGYADASVNLALTMLALGRFDEAWPLYEARWQGERADPQRHRGIARWPGVDVAAG 292 AL + ADA +NLAL++L LGR ++AWPLYE RW+G ADP RH I W G AG Sbjct: 241 ALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSADPYRHATIPAWNGGSSLAG 300 Query: 293 KTVLLWAEQGLGDAIQFSRYAQQVAALGANVVLEVHAALKTLLQTLEADPESGKPTGIVV 352 K +LLWAEQG GD IQFSRY + GA VVLEV A+L L+ +L PT + + Sbjct: 301 KRILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLALMHSL------AVPTPLTL 354 Query: 353 KAIGEVLPAVDYQLPLMSLPLMFGTRPDTIPSPQAYLHAGSHLQQRWAQSLEQ--GREGA 410 A+GE LP VD+QLPLMSLPL+ TR D IP+ YL A + W + L R A Sbjct: 355 VAMGEPLPEVDFQLPLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPA 414 Query: 411 RPLRIGIVCSGNAGNHNDRRRSIPLQAFAPL-LDIANAEFFLLQPELRQRDADWLQATSA 469 R +RIG+VCSGNAGN ND RRSI L FAPL L +FF++QP+LRQ D W + Sbjct: 415 R-MRIGLVCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPG 473 Query: 470 LQWPGRELQAFDDTAALIANLDLVIGVDTAAVHLAGALGVPVWILLSHAADWRWLLERDD 529 W G + F DTAA++A +DLVI VDTAA HLAGA+ PVWI L +A DWRWLL D Sbjct: 474 WHWVGAAINDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAAD 533 Query: 530 SPWYASARLFRQTTAGDWDAVM 551 SPWY +ARLFRQ G WD V+ Sbjct: 534 SPWYPTARLFRQQQPGAWDDVI 555 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 266 bits (679), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 189/525 (36%), Positives = 263/525 (50%), Gaps = 54/525 (10%) Query: 68 PGDLAVSYKLGRVLYEAGKHQEALSLYLQLIAAGVQHADIFHAAALLLQDFNRNEEALQT 127 PG L+ LGR L E ++ EA+++ L+ + + A A +EA+++ Sbjct: 160 PGPLS---HLGRALIECKRYNEAVAVILKSLELQISFAPSHTALGEAFHAMEMYKEAIES 216 Query: 128 IEHALRLAPQNPDAWHRHGVLLQRLQRPGDALQSLQQAVALAPE-------------QTV 174 + A+ L PQ+ A ++ +L R +A + L + + +AP+ T Sbjct: 217 HKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTS 276 Query: 175 YRFDQALLQYE--LHRNEEALASVDQVLAQEPDFGDGWVCRAATLGRLRRYEESITAARK 232 RFD A+ + L + + + + + A + D GD E++I RK Sbjct: 277 DRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGD--------------LEDAIGNFRK 322 Query: 233 ALSLRAGYADASVNLALTMLALGRFDEAWPLYEARW-QGERADPQR--HRG---IARWPG 286 AL LR Y A N+AL++L G E W +E+R ER+ R H+ I +W G Sbjct: 323 ALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDG 382 Query: 287 VDVAAGKTVLLWAEQGLGDAIQFSRYAQQVAALGANVVLEVHAALKTLLQTLEADPESGK 346 AGK +LL EQG GD+IQF RY + V GA V L V L L Q S Sbjct: 383 KSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQ-------SYS 435 Query: 347 PTGIVVKAIGEVLPAVDYQLPLMSLPLMFGTRP-DTIPS-PQAYLHAGSHLQQRWAQSLE 404 P +V+ + LP D LMSLP GT D IPS P YL A L+ W + + Sbjct: 436 PEVTLVRE-SDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIR 494 Query: 405 QGREGARPLRIGIVCSGNAGNHNDRRRSIPLQAFAPLLDIANAEFFLLQPELRQRDADWL 464 Q + LR+G+V GN + NDR RSI + FA L + N EF+ LQ + + D Sbjct: 495 QLSQSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATLFQLPNIEFYSLQ---KGKPLDAF 551 Query: 465 QATSA---LQWPGRELQAFDDTAALIANLDLVIGVDTAAVHLAGALGVPVWILLSHAADW 521 +A + G + Q F DTAA IANLDLV+ VDT+ VHLAGALG P W+LL H DW Sbjct: 552 KALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDW 611 Query: 522 RWLLERDDSPWYASARLFRQTTAGDWDAVMTRVLTELSALKQAAA 566 RWL +R+DSPWY RLFRQ DW++V+T+V EL AL+Q A Sbjct: 612 RWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKA 656 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 256 bits (655), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 205/607 (33%), Positives = 288/607 (47%), Gaps = 75/607 (12%) Query: 3 NNDALAQAYLFFQHGQLEAAHAILQPLAQQAEADFNLLHLAGAVAAGLQLHAQAIELYR- 61 N L +A Q GQL A + + + + F +L G L+LH + E Sbjct: 8 NQILLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGM----LKLHQEDWETAEA 63 Query: 62 ---RALALTPGDLAVSYKLGRVLYEAGKHQEALSLYLQLIAAGVQHADIFHAAALLLQDF 118 +A+ L P L + L G+ EA++ Y ++ + A L+ Sbjct: 64 QLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRL 123 Query: 119 NRNEEALQTIEHALRLAPQNPDAWHRHGVLLQRLQRPGDALQSLQQAVALAPE------- 171 RN EAL +E A LAP N DAW + G +L GDA +S ++AVAL P+ Sbjct: 124 GRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFN 183 Query: 172 ------------QTVYRFDQAL---------------LQYELHRNEEALASVDQVLAQEP 204 Q + +D+AL + +++ R EAL + D+ LA + Sbjct: 184 LGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDE 243 Query: 205 DFGDGWVCRAATLGRLRRYEESITAARKALSLRAGYADASVNLALTMLALGRFDEAWPLY 264 D W R +TL +L R+EE+ + R+A +L+ A+ N AL L G F W + Sbjct: 244 RAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGF 303 Query: 265 EARWQGERADPQRHRGI-ARWPGVDVAAGKTVLLWAEQGLGDAIQFSRYAQQVAALGANV 323 E RW E+ Q+ + + W G GKT+LL AEQG GD +QF RYA +AA GA V Sbjct: 304 ETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARV 363 Query: 324 VLEVHAALKTLLQTLEADPESGKPTGIVVKAIGE---VLPAVDYQLPLMSLPLMFGTRPD 380 +LEV AL L +G P V + IG + P D+ PLMSLPL T + Sbjct: 364 ILEVQPALTRQL--------AGLPG--VTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSE 413 Query: 381 TIPSPQAYLHAGSHLQQRWAQSLEQGREGARPLRIGIVCSGNAGNHN------DRRRSIP 434 YL + W Q L + R LR+G+V +G++ + D RS+P Sbjct: 414 ADIPRAPYLLPEASSWAAWHQRLPRNR----ALRVGLVWAGSSAQTHPDAVRIDGERSLP 469 Query: 435 LQAFAPLLDIANA----EFFLLQPELRQRDADWLQA---TSALQWPGRELQAFDDTAALI 487 APL+++A EF+ LQ + Q L A S ++ EL F +T AL+ Sbjct: 470 FATLAPLVELAREHAALEFYSLQ--VGQDAVAQLHAHPLASLVRDCSPELHDFAETGALL 527 Query: 488 ANLDLVIGVDTAAVHLAGALGVPVWILLSHAADWRWLLERDDSPWYASARLFRQTTAGDW 547 ANLDL+I VDT+ HLAGALG PVW+L H WRW +ER+DSPWY +F Q TAG W Sbjct: 528 ANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQW 587 Query: 548 DAVMTRV 554 D V+ RV Sbjct: 588 DEVIARV 594 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 139/414 (33%), Positives = 189/414 (45%), Gaps = 26/414 (6%) Query: 151 RLQRPGDALQSLQQAVALAPEQTVYRFDQALLQYELHRNEEALASVDQVLAQEPDFGDGW 210 +L +P AL ++++A+A A + L+R+EEAL ++ Sbjct: 121 QLDQPLPALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHA 180 Query: 211 VCRAATLGRLRRYEESITAARKALSLRAGYADASVNLALTMLALGRFDEAWPLYEARWQ- 269 A L R+ R E++ A +AL + +A V A +L+ + E W +EAR+ Sbjct: 181 FNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGI 240 Query: 270 GERADPQRHRGI----ARWPGVDVAAGKTVLLWAEQGLGDAIQFSRYAQQVAALGANVVL 325 E A RGI RW + GK VLLWAEQG GD +QF+RY VA A V L Sbjct: 241 AELA----RRGIDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSL 296 Query: 326 EVHAALKTLLQTLEADPESGKPTGIVVKAIGEVLPAVDYQL---PLMSLPLMFGTRPDTI 382 A+L +L P V+ + A D+ L L L+ P Sbjct: 297 CAPASLLAVL----------APCLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQG 346 Query: 383 PSPQAYLHAGSHLQQRWAQSLEQGREG-ARPLRIGIVCSGNAGNHNDRRRSIPLQAFAPL 441 P P YL A Q+W L R R+GI +G R IPL A APL Sbjct: 347 P-PSPYLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPL 405 Query: 442 LDIANAEFFLLQPELRQRDADWLQATSALQWPGRELQAFDDTAALIANLDLVIGVDTAAV 501 + A+F LQ E+ D AT A + L + DTAAL+ LDLVI VDTA V Sbjct: 406 WTL-PADFVSLQVEVPAGDQA-AHATLAQRLHTPTLVDWADTAALLCALDLVISVDTAVV 463 Query: 502 HLAGALGVPVWILLSHAADWRWLLERDDSPWYASARLFRQTTAGDWDAVMTRVL 555 HLAGALGVP + L + +WRW ++ +PWY S +L RQ G W V+ +L Sbjct: 464 HLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEML 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,832,421 Number of extensions: 80248 Number of successful extensions: 370 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 6 Length of query: 566 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 476 Effective length of database: 1,193,720 Effective search space: 568210720 Effective search space used: 568210720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)