BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0075.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxida...   644   0.0  

>gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxidase
           subunit 1 [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/342 (91%), Positives = 332/342 (97%)

Query: 1   MLPIDEVVSLSRLQFAITALYHFLFVPLTLGLSWILVIMESVYVMTGSPIYKDMTRFWGK 60
           M+PIDEVVSLSRLQFA+TALYHFLFVPLTLGLSWILVIMESVYVMTG+ IYKDMTRFWGK
Sbjct: 1   MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60

Query: 61  LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMAAFFLESTFVGLFFFG 120
           LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEG+ AFFLESTFVGLFFFG
Sbjct: 61  LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120

Query: 121 WDRLSRVKHLMVTFLVALGSSLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180
           WD+LSR +HL+VT LVALGS+LSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN
Sbjct: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180

Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAYYLLKGRDTAFALRSFAVAAGFGLASTLSVIVL 240
           PVAQVKFVHTVAAGYVTASMFVLGVSA+YLLK RDTAFALRSFAVAAGFGLA+TLSVIVL
Sbjct: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240

Query: 241 GDESGYTAGEVNKVKLAAIEAEWETHPAPAGITVFGLPDNKGERTDYAFKVPYVLGLIAT 300
           GDESGYTAGEVNKVKLAAIEAEW+THPAPAG+T+FGLP++K ERTDYA K+PYVLGLIAT
Sbjct: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300

Query: 301 RSVDTPVIGIKDLKKEHEVRIRNGMLAYAALTRLKSGDKSPE 342
           RS DT V+GIKDLKKEHE RIRNGMLAYAALT+LKSGDKSPE
Sbjct: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPE 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,235,668
Number of extensions: 52265
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)