BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0074.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxida...   241   2e-65

>gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxidase
           subunit 1 [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  241 bits (616), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/149 (79%), Positives = 129/149 (86%)

Query: 1   VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWI 60
           VAPLFWSFRGMVALG LFLFIFSASF+FL +KQLAPQRWLLRLAV SIPLPWIAAELGWI
Sbjct: 386 VAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAPQRWLLRLAVISIPLPWIAAELGWI 445

Query: 61  VAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPS 120
           VAEYGRQPWTIAGILPT LSAS+LQ  SLYFSLAGF+LFYTFLLVVEM+LM+KYA+ GPS
Sbjct: 446 VAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFYTFLLVVEMILMVKYARLGPS 505

Query: 121 SLHTGKYHWELLEKTKKPAVAAKPPVPPQ 149
           SLHTG+Y+WE   K   P     PP+ P 
Sbjct: 506 SLHTGQYYWENKGKESGPGDVLPPPLNPS 534


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 440,303
Number of extensions: 16155
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)