BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0073.p
         (380 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312362|ref|YP_003776454.1| cytochrome bd-type quinol oxida...   597   e-172

>gi|300312362|ref|YP_003776454.1| cytochrome bd-type quinol oxidase
           subunit 2 [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  597 bits (1540), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/380 (77%), Positives = 329/380 (86%), Gaps = 1/380 (0%)

Query: 1   MIFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEG 60
           MIFDYETLK+IWWAFVGVLIIGFALTDGFDFGVGMMLPF GK D ERR+LIN+IGPTWEG
Sbjct: 1   MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEG 60

Query: 61  NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120
           NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW
Sbjct: 61  NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120

Query: 121 DWGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAM 180
           DWGLF+GG VPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFF LLNPFGLLAG+LSVAM
Sbjct: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM 180

Query: 181 LLTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANS 240
           LL HGA F  VKTEAA+A R+RK  + +AL T+ LF+A GFWVA  + GY I  MP ANS
Sbjct: 181 LLMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANS 239

Query: 241 AFMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAV 300
           AF PLAKTVE+V+GAW DNY +WP T+  P   +AG +L  +    R ARLAFI S ++V
Sbjct: 240 AFTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSV 299

Query: 301 AGIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVY 360
            GIILTA  ++FPF+MPSSLD +SSLT+WDSVSSHKTLG+MFW+VL F+PLI++YT WVY
Sbjct: 300 TGIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVY 359

Query: 361 RVMRGKVTLKHIADNEHTAY 380
           RV++GKVT + I +NEHTAY
Sbjct: 360 RVVKGKVTARDIHENEHTAY 379


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,193,766
Number of extensions: 48628
Number of successful extensions: 268
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,207,925
Effective search space: 353922025
Effective search space used: 353922025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)