BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0070.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312364|ref|YP_003776456.1| regulator of disulfide bond for...   239   7e-65

>gi|300312364|ref|YP_003776456.1| regulator of disulfide bond
           formation redox protein [Herbaspirillum seropedicae
           SmR1]
          Length = 144

 Score =  239 bits (609), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 129/140 (92%)

Query: 2   KIEKALYQATATATGGREGSAKSSDGVLDIKLSTPKELGGAGGNGTNPEQLFAAGYSACF 61
           KIEKALY ATATATGGREGSAKSSDGVLD+KLSTPKELGGAGGNGTNPEQLFAAGYSACF
Sbjct: 5   KIEKALYTATATATGGREGSAKSSDGVLDVKLSTPKELGGAGGNGTNPEQLFAAGYSACF 64

Query: 62  LGAIKFVGGQEKIAIPADTSITGTVGIGTLPGGFGIEAALNISLPGLDRAVAQSLIEKAH 121
           LGA+KFV GQ K+A+PAD SITG VGIG +PGGFGIEA LNISLPG+DRAVAQ L+ KAH
Sbjct: 65  LGALKFVAGQAKVALPADASITGKVGIGQIPGGFGIEAELNISLPGVDRAVAQDLVNKAH 124

Query: 122 QVCPYSNATRGNINVTLTLV 141
           QVCPYSNATR NINVTL LV
Sbjct: 125 QVCPYSNATRDNINVTLNLV 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 471,565
Number of extensions: 20580
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)