BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0069.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312365|ref|YP_003776457.1| transcription regulator protein...   206   5e-55
gi|300311177|ref|YP_003775269.1| transcription regulator protein...   144   3e-36

>gi|300312365|ref|YP_003776457.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  206 bits (525), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/140 (74%), Positives = 120/140 (85%), Gaps = 1/140 (0%)

Query: 1   MLENQLCFAMYSASLAMTKVYKKLLKDLDITYPQYLVMLVLWEKDEVTVSDLGGKLFLDS 60
           +L++QLCFAMYSASLAMTK YKKLL  LDITYPQYLVM+VLWEKD+VTVS+LGG+LFLDS
Sbjct: 19  LLDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRLFLDS 78

Query: 61  GTLTPLLKRMEAMGLLHRARDTEDERRVVVRLSQDGRALRKRAMAVPERLMCALPPLEQV 120
           GTLTPLLKRMEAMGLLHR RD EDERRV+V L+  GRALR++A  VP ++ C LP L+QV
Sbjct: 79  GTLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALREKAKTVPLQMSCMLPSLDQV 138

Query: 121 ANLREQLKGLRKGLLDGAED 140
            NL  +LK +RKGL D AED
Sbjct: 139 KNLVVELKQVRKGLQD-AED 157


>gi|300311177|ref|YP_003775269.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score =  144 bits (363), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 1   MLENQLCFAMYSASLAMTKVYKKLLKDLDITYPQYLVMLVLWEKDEVTVSDLGGKLFLDS 60
           +L+ QLCFA+YS SL+M+K+Y+KLL+DL ITY QYLV++VLWE+D++TVS++G +L LDS
Sbjct: 13  LLDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLVLDS 72

Query: 61  GTLTPLLKRMEAMGLLHRARDTEDERRVVVRLSQDGRALRKRAMAVPERLMCALPPL-EQ 119
            TLTPLLKRMEA GL+ R R   DER+VV+ L+ +G  LR++A+ +P  ++ A      +
Sbjct: 73  ATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATESTAAE 132

Query: 120 VANLREQLKGLRKGLLDGAED 140
           +A ++E+L  LR  L     D
Sbjct: 133 LAAIKEELMQLRARLHKNTGD 153


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 381,564
Number of extensions: 13091
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)