BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0066.p
         (332 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761...   213   2e-56
gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirill...   116   2e-27

>gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  213 bits (541), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/287 (42%), Positives = 168/287 (58%), Gaps = 7/287 (2%)

Query: 6   SSPDLSFVDGIRTASRRMVRELGFMQSTLAATDYPPSAVHAIIEIGARKSMSAAQLAEFL 65
           + P    +  +R  SR++VRELGFM+STLA +D  PSAVHAIIEIG R  + A +L E L
Sbjct: 8   TPPREQTIRQLRELSRKLVRELGFMRSTLAGSDLAPSAVHAIIEIGLRPGLQARELGEVL 67

Query: 66  GLEKSSVSRMVRKLVEAGELQERASDVDGRVKWLALTPQGRRTLTAVQAYGRKQVLGALE 125
            L+KS+ SR + KL   G ++   +  DGR   L LT  G+     +  +   QV  AL 
Sbjct: 68  YLDKSNTSRQLAKLEALGLVRRSPAPGDGRAFSLTLTEAGQVLRKKIDKFATDQVSAALR 127

Query: 126 QLSADQQDAVAQGLSVYALALEARRSGEAIV----QADEIRIVAGYQAGVIGRIVQMHAM 181
           ++  + Q  + + L++Y+ AL +R +  A+      + E  +  GYQ G IG I  +HA 
Sbjct: 128 RIMPEDQQGLVRALALYSEAL-SRDNPNAVAGSARGSAEAPLAQGYQPGCIGDIASLHAR 186

Query: 182 FYARSVGFGSFFESKVAAGLAEFVPRLDHPRNGLWLAVQGRRIVGSVAIDGQDLGDNKAH 241
           +YA + GFG +FE KVA+ L  FV  L  P   +W   +  R + S+ IDG D+    AH
Sbjct: 187 YYAEAAGFGVYFEHKVASELGAFVQSLPAPGKAIWTHQEHGRTLASIVIDG-DVASGLAH 245

Query: 242 LRWFIVDDGVRGAGVGRRLMDAAMAFCDAQGFASVQLWTFQGLDGAQ 288
           LRWFIVDD +RG GVGRRL++ AMA  DA  F    LWTFQGLD A+
Sbjct: 246 LRWFIVDDSLRGRGVGRRLLEQAMALVDAHHF-DCYLWTFQGLDAAR 291


>gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 163

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 79/130 (60%)

Query: 159 DEIRIVAGYQAGVIGRIVQMHAMFYARSVGFGSFFESKVAAGLAEFVPRLDHPRNGLWLA 218
           D+I I  GY  G IGR+ ++HA +Y  +  FG +FE+++A  LA F+ R D  R+G W A
Sbjct: 2   DDIHIRRGYLPGAIGRVAELHAAYYTENWSFGVYFEARIATELAAFMSRYDDARDGFWTA 61

Query: 219 VQGRRIVGSVAIDGQDLGDNKAHLRWFIVDDGVRGAGVGRRLMDAAMAFCDAQGFASVQL 278
               RI G++ IDGQ   +  A LRWFI  + +RG GVG  L+  A+  C  +  AS+ L
Sbjct: 62  TVHGRIEGALTIDGQHAQEQGAWLRWFIASEKLRGRGVGDALLSEAVRCCAERDIASIYL 121

Query: 279 WTFQGLDGAQ 288
           WTF+GL  A+
Sbjct: 122 WTFEGLHAAR 131


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,007,364
Number of extensions: 40937
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,212,660
Effective search space: 298314360
Effective search space used: 298314360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)