BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0062.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar ep...   535   e-153
gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase [Herbas...   133   2e-32

>gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  535 bits (1379), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/299 (86%), Positives = 279/299 (93%)

Query: 5   LTGSDGKQQTISRITLLDVVAAQGFDDARIEAVVGDIADAAVIERAITRDTQSIFHLAAI 64
           LTG DG+ Q I RITLLDV  AQGFDD RIEAV GDIADAAVIER IT +TQSIFHLAAI
Sbjct: 26  LTGRDGQPQAIKRITLLDVAPAQGFDDPRIEAVTGDIADAAVIERVITAETQSIFHLAAI 85

Query: 65  VSGQAEADFELGMKINFDATRIILERARALGTKPRVVFTSSVAVFGGDLPAQVPDNALLM 124
           VSG AEADF+LGMKINFDATR+ILERARALG+KPRVVFTSSVAVFGG+LPA VPDN LLM
Sbjct: 86  VSGHAEADFDLGMKINFDATRVILERARALGSKPRVVFTSSVAVFGGELPAVVPDNTLLM 145

Query: 125 PQSSYGAQKVMGELLINDYSRKDYIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNG 184
           PQSSYGAQKVMGELL+ DYSRK +IDGRALRMPTISVRPGAPNKAASSFASGIIREPLNG
Sbjct: 146 PQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNG 205

Query: 185 QPSVCPVAPDTRMWLMSPRKAIDNLIHGHEINGADLGLARFLSIDGLSVSVRQMVDALEQ 244
           QPSVCPV PDTRMWLMSPR+AI NLIHGHEINGADLGLARFLSIDGL V+V++MV+ALEQ
Sbjct: 206 QPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGADLGLARFLSIDGLCVTVKEMVEALEQ 265

Query: 245 VAGADVVKLIEWKEDEAIKRIVNSWPGSFEAKRAKALGFTADSDFASIVKAHIEDEMKK 303
           VAG +VV+LIEWKEDEAIKRIVNSWPG+FEAKRAKALGFTAD++FA I++AHIEDE+KK
Sbjct: 266 VAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAKALGFTADANFADIIRAHIEDEVKK 324


>gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  133 bits (334), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 134/271 (49%), Gaps = 10/271 (3%)

Query: 30  DDARIEAVVGDIADAAVIERAITRDTQSIFHLAAIVSGQAEADFELGMKINFDATRIILE 89
           D  RIE   G++ DA V  + +       FHLAA+  G AEAD  L  ++N DAT  + E
Sbjct: 47  DMVRIE---GNLQDAQVQAQIVAFGADLCFHLAALPGGAAEADPALSRRVNLDATLDLFE 103

Query: 90  ---RARALGTKPRVVFTSSVAVFGGDLPAQVPDNALLMPQSSYGAQKVMGELLINDYSRK 146
              R       P VV+ S++AV+G DLP  V       P   YGA K+  E+L+ DY+R+
Sbjct: 104 LLARRDPATPPPVVVYASTIAVYGLDLPDPVTPATPPRPALIYGAHKLACEILLADYTRR 163

Query: 147 DYIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNGQPSVCPVAPDTRMWLMSPRKAI 206
             +DGR+LR+P I  RP A +   S+F S ++     G+   CPV P    W MS ++  
Sbjct: 164 GLLDGRSLRLPGIVARPRAASGLVSAFMSELLHALAAGELFTCPVGPQATAWWMSAQRCA 223

Query: 207 DNLIHGHEINGA---DLGLARFLSIDGLSVSVRQMVDALEQVAGADVVKLIEWKEDEAIK 263
           +NL+H   ++     +   AR   +  L +S+ Q+V  L  + G D   L+ +     ++
Sbjct: 224 ENLLHAASMDPTRDPEGAAARVWPLPVLRLSIAQVVATLSALYGVDGQALVRYAPQPQVE 283

Query: 264 RIVNSWPGSFEAKRAKALGFTADSDFASIVK 294
            +   +P   + + A+ LG   D     +V+
Sbjct: 284 AVFGRYP-RLDDRAARQLGLRDDGSVQEMVE 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 911,693
Number of extensions: 36301
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)