BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0058.p (291 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t... 401 e-113 gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 216 2e-57 gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 212 3e-56 gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 212 3e-56 gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC t... 67 3e-12 >gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 401 bits (1030), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/207 (97%), Positives = 205/207 (99%) Query: 1 VTRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFH 60 VTRAREWLDRDKVEAIADLTNSSVALAVQKLIK+KGGIAMYSGPATGALTTAECA NGFH Sbjct: 92 VTRAREWLDRDKVEAIADLTNSSVALAVQKLIKDKGGIAMYSGPATGALTTAECAPNGFH 151 Query: 61 WMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPL 120 WMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTV+GSVRHPL Sbjct: 152 WMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVVGSVRHPL 211 Query: 121 NASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHA 180 NASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHA Sbjct: 212 NASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHA 271 Query: 181 LGLDAAQGLVYTDGFYWDYDEQTRGFS 207 LGL+AAQGLVYTDGFYWDYDEQTR FS Sbjct: 272 LGLEAAQGLVYTDGFYWDYDEQTRAFS 298 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 216 bits (549), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 105/207 (50%), Positives = 143/207 (69%), Gaps = 1/207 (0%) Query: 2 TRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHW 61 ++AREW D+ V+ + TNS ALA K+ EK + M G + LT EC+ H+ Sbjct: 87 SKAREWFDQQGVDMLIGGTNSGTALASAKVAAEKKKVYMQIGAGSARLTNEECSPYTVHY 146 Query: 62 MFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLN 121 +DT + A G +A+ K G KSW+F+T DYAFGHSLE D ++VVKA+GGTV+G+V+HPL Sbjct: 147 AYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLESDTANVVKASGGTVVGAVKHPLG 206 Query: 122 ASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHAL 181 ASDFSSFLLQAQ+SKAQ+IGLA+ G D +N++K A F + K +L LLVF++DVH+L Sbjct: 207 ASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAANEFGI-TKTAKLAGLLVFINDVHSL 265 Query: 182 GLDAAQGLVYTDGFYWDYDEQTRGFSP 208 L +GL TD +YWD +E+TR F+ Sbjct: 266 TLKNTEGLYLTDSWYWDANEETRAFAK 292 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 212 bits (540), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 105/206 (50%), Positives = 142/206 (68%), Gaps = 1/206 (0%) Query: 2 TRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHW 61 TRAREW D ++ + NS+ AL++ K++ EK + + G T LT EC H+ Sbjct: 89 TRAREWADERGLDMLIGGVNSATALSMNKVMAEKKRVYINIGAGTARLTNEECTPYTVHY 148 Query: 62 MFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLN 121 +DT + A G A+A+ K G KSW+F+ DYAFGHSL D S VVKA+GGTV+GS++HP Sbjct: 149 EYDTVALAKGTASAVIKQGGKSWFFLVADYAFGHSLANDTSAVVKASGGTVVGSIKHPPQ 208 Query: 122 ASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHAL 181 +SD SSFLLQAQASKAQ++GLA+ G D VN+IK A+ F V K +LV LL+ ++D+HAL Sbjct: 209 SSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAAKEFGV-TKTMKLVGLLMVINDIHAL 267 Query: 182 GLDAAQGLVYTDGFYWDYDEQTRGFS 207 GL A+GL+ TD +YWD DE +R F+ Sbjct: 268 GLANAEGLMMTDSWYWDKDEPSRKFA 293 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 212 bits (539), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 105/206 (50%), Positives = 140/206 (67%), Gaps = 1/206 (0%) Query: 2 TRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHW 61 +AREW DRD V+ + NS+ +LA+ K+ EK + + G T T EC + + Sbjct: 89 NKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAYTIQY 148 Query: 62 MFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLN 121 +DT + A G AA+T+ G KSWYF+T DYAFG SLEKD S+VVK+NGG V+G+ R PL Sbjct: 149 AYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATRVPLA 208 Query: 122 ASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHAL 181 SDFSSFLLQAQ+SKAQ++GLA G DV+NAIK A F V K +L LL+F++D H+L Sbjct: 209 TSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGV-NKTMKLAGLLIFINDTHSL 267 Query: 182 GLDAAQGLVYTDGFYWDYDEQTRGFS 207 GL QG+ TDG+YWD ++QTR ++ Sbjct: 268 GLSLTQGMYLTDGWYWDLNDQTRAWA 293 >gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 397 Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 3/166 (1%) Query: 34 EKGGIAMYSGPATGALTTAECASNGFHWMFDTYSQAAGAA-AALTKLGN-KSWYFVTVDY 91 +K G + +T ++C F W T+ L K+ N K WY +T Y Sbjct: 115 DKAGAVFITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQY 174 Query: 92 AFGHSLEKDASDVVKANGGTVLGSVRHPLNASDFSSFLLQAQASKAQVIGLADGGTDVVN 151 FG L A ++ K G +G+ H L +FS +L A A+K V+ L + G+ + Sbjct: 175 VFGEGLLSAAKNIFKEKGIEHVGNSYHSLTEKEFSGYLTNAIAAKPDVLLLLNFGSQSSD 234 Query: 152 AIKQARSFAVGGKDQRLVALLVFLSDVHALGLDAAQGLVYTDGFYW 197 ++QA SF + L+A L LG D G VY YW Sbjct: 235 TLRQAVSFGMKNNCTILMAWASGLEQFETLGADICDG-VYFGAQYW 279 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 977,723 Number of extensions: 42222 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 5 Length of query: 291 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 207 Effective length of database: 1,222,130 Effective search space: 252980910 Effective search space used: 252980910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)