BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0050.p
         (419 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312383|ref|YP_003776475.1| methionyl-tRNA synthetase [Herb...   816   0.0  

>gi|300312383|ref|YP_003776475.1| methionyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 690

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/416 (92%), Positives = 397/416 (95%)

Query: 1   MFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLSGATPVMKSSEHFFFK 60
           MFLPDRYIKGECPKCGTKDQYGDSCENCSAVY+PTDLKNPYSTLSGATPVMKSSEHFFFK
Sbjct: 137 MFLPDRYIKGECPKCGTKDQYGDSCENCSAVYSPTDLKNPYSTLSGATPVMKSSEHFFFK 196

Query: 61  LSDPKCVAFLREWALDNNRLQPEVANKAKEWLDGEGGLGDWDISRDAPYFGIEIPDAPGK 120
           LSDPKCVAFLREWALD+NRLQPEVANKAKEWLDGEGGLGDWDISRDAPYFGIEIPDAPGK
Sbjct: 197 LSDPKCVAFLREWALDSNRLQPEVANKAKEWLDGEGGLGDWDISRDAPYFGIEIPDAPGK 256

Query: 121 YFYVWLDAPIGYLASLKNYFGKTGRDFDAFMADDKTEQYHFIGKDITYFHTLFWPAMLKF 180
           YFYVWLDAPIGYLASLKNYF KTGRDFDAFMADDKTEQYHFIGKDITYFHTLFWPAMLKF
Sbjct: 257 YFYVWLDAPIGYLASLKNYFAKTGRDFDAFMADDKTEQYHFIGKDITYFHTLFWPAMLKF 316

Query: 181 AGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIAAKLNAKVEDV 240
           AGRKTP NVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIAAKLNAKVEDV
Sbjct: 317 AGRKTPNNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIAAKLNAKVEDV 376

Query: 241 DFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGKLSTAWATADDAFLTKLRGIAPEI 300
           DFNPDDFVARVNADLIGKYVNIASRAAGFIAKRF+G++ST WATADDAFL KLRG+A EI
Sbjct: 377 DFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGRVSTQWATADDAFLAKLRGVADEI 436

Query: 301 LALYEQREYGKALRAIMEQADVINAYVDANKPWELAKDSTKDVQLHEVCSRLLEAFRILT 360
            +LYEQREYGKALR +MEQAD INAYVDANKPWELAKDS +D QLHEVCSRLLEAFRILT
Sbjct: 437 RSLYEQREYGKALRLVMEQADAINAYVDANKPWELAKDSARDAQLHEVCSRLLEAFRILT 496

Query: 361 VYLKPVLPQLAAQVEGFLNVAPFTWADVQTALPDGHVINAYAHLMQRVDPKMLDAL 416
           VYLKPVLPQLAAQVE FL V PF W DV   L DGHVI+AY+HLMQRVDPKMLDAL
Sbjct: 497 VYLKPVLPQLAAQVEAFLQVQPFQWGDVAMPLADGHVIHAYSHLMQRVDPKMLDAL 552


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,305,652
Number of extensions: 52741
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,203,190
Effective search space: 398255890
Effective search space used: 398255890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)