BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0046.p
         (85 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t...    55   1e-09

>gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 2   AGALLSTFFPIFPEVGANFILIAFVVVNLGGFGSVVGALIAGVLVGVIEVMGGLFLGPQY 61
           AG L +    + P +G+N I+  F VV +GG GS++G++I G+++G+IE +  +F  P+ 
Sbjct: 211 AGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVLGLIEGLTRVFY-PEL 269

Query: 62  KMAIVLVLFLTVLMFRPQGLMGK 84
              +V ++   VLM RP GL GK
Sbjct: 270 SATVVFIIMAIVLMVRPAGLFGK 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.334    0.153    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 208,083
Number of extensions: 5426
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 7
Length of query: 85
Length of database: 1,619,870
Length adjustment: 55
Effective length of query: 30
Effective length of database: 1,359,445
Effective search space: 40783350
Effective search space used: 40783350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 123 (52.0 bits)