BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0045.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC t...    70   1e-13
gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t...    68   5e-13
gi|300312238|ref|YP_003776330.1| amino acid ABC transporter perm...    66   2e-12
gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t...    65   4e-12
gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t...    64   6e-12

>gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 408

 Score = 69.7 bits (169), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 7   SLPLTPTASAPGFNKTHGLLVALLVLALALPLYVTSPSHQNLAILILMAAQIGVSWNIVG 66
            LP  P        +    ++ LL+ AL  P +  S  + ++  L L+   +G+  NIV 
Sbjct: 68  KLPALPRMQP---RQQRAAVMILLMAALVWPFF-GSRGYVDVMTLALIYVVLGLGLNIVV 123

Query: 67  GYAGQVSLGHVAFYGIGAYTSAILLSVYGINPWFAMVVGGVIAALVSLVIGWSCFRLKGH 126
           G+AG + LG+V FY +GAYT A+    +G+  W  + +    +AL   ++G+   RL+G 
Sbjct: 124 GFAGLLDLGYVGFYAVGAYTYALCNQYFGLTFWECVPLAAAASALFGFLLGFPVLRLRGD 183

Query: 127 YFAMATIAVAEIIQIVFTN 145
           Y A+ T+   EII+++  N
Sbjct: 184 YLAIVTLGFGEIIRLLLNN 202


>gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 655

 Score = 68.2 bits (165), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 3/132 (2%)

Query: 19  FNKTHGLLVALLVLALA-LPLYVTSPSHQNLAILILMAAQIGVSWNIVGGYAGQVSLGHV 77
            NK   LL  L ++ALA +P+ V +P + +L   IL+ A +    +IV GY GQVSLGH 
Sbjct: 1   MNKKILLLSLLGIVALAGIPMVVHNPYYLHLIETILIYAILLFGLDIVVGYTGQVSLGHA 60

Query: 78  AFYGIGAYTSAILLSVYGINPWFAMVVGGV-IAALVSLVIGWSCFRLKGHYFAMATIAVA 136
             +GIG+Y + +L    G+ P F  V   + + A+   ++     R+ G Y AM T+A  
Sbjct: 61  GLFGIGSYAAGVLFFKLGM-PIFVTVPAAIAVTAVFGAILALPALRVTGPYLAMVTLAFG 119

Query: 137 EIIQIVFTNWDF 148
            IIQI+     F
Sbjct: 120 TIIQILINEMTF 131


>gi|300312238|ref|YP_003776330.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score = 66.2 bits (160), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 51/81 (62%)

Query: 70  GQVSLGHVAFYGIGAYTSAILLSVYGINPWFAMVVGGVIAALVSLVIGWSCFRLKGHYFA 129
           G +SL + AF GIGAYT+++L   + +    A+  GGV+ ALV+LVIG    RL G Y A
Sbjct: 35  GLLSLANAAFMGIGAYTASLLTMQFEMPFPIALAAGGVLPALVALVIGIPTLRLSGVYLA 94

Query: 130 MATIAVAEIIQIVFTNWDFAG 150
           MAT+   E+++++  N D  G
Sbjct: 95  MATLGFGEVVRVIVLNLDITG 115


>gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 628

 Score = 65.1 bits (157), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 2/106 (1%)

Query: 43  PSHQNLAILILMAAQIGVSWNIVGGYAGQVSLGHVAFYGIGAYTSAIL-LSVYGINPWFA 101
           P    L + IL+A     S + + G  G VS GH A++G+GAY +A++ L +    P  A
Sbjct: 345 PYLPVLMVEILVAVLFAASLHFLMGPGGMVSFGHAAYFGLGAYAAALVTLRLQWPMP-LA 403

Query: 102 MVVGGVIAALVSLVIGWSCFRLKGHYFAMATIAVAEIIQIVFTNWD 147
           M+ G   A L +L+ GW C RL G Y AM T+A A+I+      WD
Sbjct: 404 MLAGAGTAMLAALLFGWFCVRLSGVYLAMLTLAFAQIVWAAIYQWD 449


>gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 597

 Score = 64.3 bits (155), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%)

Query: 67  GYAGQVSLGHVAFYGIGAYTSAILLSVYGINPWFAMVVGGVIAALVSLVIGWSCFRLKGH 126
           G  G  S G  AF G+GAYT++ L +V+G++PW  + VG  I  + + V+G    R+ GH
Sbjct: 50  GIGGMTSFGQAAFVGMGAYTTSYLTTVHGVSPWLTLPVGLFITGVSAYVLGRITLRMSGH 109

Query: 127 YFAMATIAVAEIIQIVFTNWDFAG 150
           Y  +ATIA    +  +F   DF G
Sbjct: 110 YLPLATIAWGISLYFLFGKVDFLG 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 502,433
Number of extensions: 19139
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 13
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 13
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)