BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0044.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314046|ref|YP_003778138.1| NAD-dependent aldehyde dehydrog...   142   9e-36
gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde ...    67   3e-13
gi|300310458|ref|YP_003774550.1| NADP-dependent succinate-semial...    60   7e-11
gi|300313231|ref|YP_003777323.1| NAD-dependent aldehyde dehydrog...    60   8e-11
gi|300312825|ref|YP_003776917.1| NAD-dependent aldehyde dehydrog...    58   2e-10

>gi|300314046|ref|YP_003778138.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 472

 Score =  142 bits (358), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 87/130 (66%)

Query: 1   MRIAHEEIFGPILPIFTYRDVEEAIAYVNARPRPLALYYFGADDENRRKVLSRTMSGNVT 60
           MR+  EEIFGP+LPI  Y   E+AIA V   PRPLALY+FG D   R ++L +T +G VT
Sbjct: 341 MRVMQEEIFGPVLPILEYDQAEDAIAQVRQGPRPLALYWFGEDAARREQMLRQTHAGGVT 400

Query: 61  INGTIMHIAQDDLPFGGVGPSGMGAYHGVEGFRTFSHAKGIYEQGRWNLANLLHAPFKQP 120
           IN  + H+ Q++ PFGGVG SGMGAYHG  GF TFS  K ++ Q R+N   LLH P+ + 
Sbjct: 401 INDCLWHLVQEEQPFGGVGESGMGAYHGRWGFDTFSKRKPVFRQARFNGGTLLHPPYGKT 460

Query: 121 IDTILNMMLR 130
            + +L ++ R
Sbjct: 461 FERVLGLIRR 470


>gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score = 67.4 bits (163), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MRIAHEEIFGPILPIFTYRDVEEAIAYVNARPRPLALYYFGADDENRRKVLSRTMSGNVT 60
           M IA EEIFGP+L I  Y  VEEAIA  N     L  +  G D +  R V +R  SG V 
Sbjct: 384 MVIAQEEIFGPVLAILPYDTVEEAIAIANDTVYGLGAHVQGRDKDQVRAVAARIQSGQVH 443

Query: 61  INGTIMHIAQD-DLPFGGVGPSGMGAYHGVEGFRTFSHAKGI 101
           +N    + A D   PFGG   SG G  +GVEG   +   K I
Sbjct: 444 LN----YPAWDPQAPFGGYKQSGNGREYGVEGMEEYMEVKAI 481


>gi|300310458|ref|YP_003774550.1| NADP-dependent
           succinate-semialdehyde dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 493

 Score = 59.7 bits (143), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 1   MRIAHEEIFGPILPIFTYRDVEEAIAYVNARPRPLALYYFGADDENRRKVLSRTMSGNVT 60
           M+ + EE FGP+ PI  +   +E IA  NA P  LA Y++  D     +V     SG V 
Sbjct: 390 MQCSCEETFGPVAPITRFATEDEVIAAANATPFGLAAYFYSTDVRRIHRVTDALESGIVG 449

Query: 61  INGTIMHIAQDDLPFGGVGPSGMGAYHGVEGFRTFSHAK 99
           +N   +  A +  PFGGV  SG G    V G   + H K
Sbjct: 450 VNEGAL--AAEAAPFGGVKESGYGREGSVHGLDDYLHTK 486


>gi|300313231|ref|YP_003777323.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 480

 Score = 59.7 bits (143), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 2   RIAHEEIFGPILPIFTYRDVEEAIAYVNARPRPLALYYFGADDENRRKVLSRTMSGNVTI 61
           R+  EE FGPI  +  +   EEAIA  NA P  LA Y F    +   +V     +G V I
Sbjct: 375 RVMQEEPFGPIAAVTPFSQAEEAIAMANALPLGLASYVFTQSLDTAHRVSRDLQAGMVNI 434

Query: 62  NGTIMHIAQDDLPFGGVGPSGMGAYHGVEGFRTFSHAKGIYE 103
           N + M  A  +LPFGG+G SG G+  GVEGF +F   K I +
Sbjct: 435 NHSGM--AHPELPFGGIGESGFGSEGGVEGFESFLVTKMISQ 474


>gi|300312825|ref|YP_003776917.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 476

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 2   RIAHEEIFGPILPIFTYRDVEEAIAYVNARPRPLALYYFGADDENRRKVLSRTMSGNVTI 61
           R+  EE FGP+LPI  Y D+E+AIA  N     L    + +D +   +V +R  +G V +
Sbjct: 375 RLVDEEQFGPVLPIIRYSDLEQAIANANRLDVGLGASVWSSDSQRAAQVATRLQAGTVWV 434

Query: 62  NGTIMHIAQDDLPFGGVGPSGMGAYHGVEGFRTFSHAKGI 101
           N   M      +PFGG   SG G   G EG +  +  + I
Sbjct: 435 NQHGM--VHPMVPFGGNKRSGWGVEFGQEGLKGVTQPQVI 472


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.142    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 449,522
Number of extensions: 18960
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 8
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)