BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0043.p (236 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 99 2e-22 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 98 5e-22 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 85 4e-18 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 84 8e-18 gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 74 1e-14 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 71/135 (52%), Gaps = 15/135 (11%) Query: 31 PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90 PNGAGKTT FN I G P TG L+ S +P + A+ GI RTFQ R F MT L Sbjct: 39 PNGAGKTTFFNVITGLYQPDTGTFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVL 98 Query: 91 ENVMVGAFLNERG---------------VGPARRTAQELLDFVNLGRFADKPAGSMTISE 135 ENVMVG + R R +Q+LLDFV +G+FA + A ++ + Sbjct: 99 ENVMVGCHVRTRQNVFGAVFRHKAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGD 158 Query: 136 QRRLAVARARAVGEQ 150 QRRL +ARA A Q Sbjct: 159 QRRLEIARALATDPQ 173 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 98.2 bits (243), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/135 (42%), Positives = 74/135 (54%), Gaps = 15/135 (11%) Query: 31 PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90 PNGAGKTT FN I G P TG L+ S +P + A+ GI RTFQ R F MT L Sbjct: 39 PNGAGKTTFFNVITGLYQPDTGTFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVL 98 Query: 91 ENVMVGAFL-NERGVGPA--------------RRTAQELLDFVNLGRFADKPAGSMTISE 135 ENVMVG + ++ V A R +Q+LLDFV +G+FA + A ++ + Sbjct: 99 ENVMVGCHVRTKQNVFGAVFRHKAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGD 158 Query: 136 QRRLAVARARAVGEQ 150 QRRL +ARA A Q Sbjct: 159 QRRLEIARALATDPQ 173 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 85.1 bits (209), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 15/129 (11%) Query: 31 PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90 PNGAGKTT+FNCI+G+ PT+G+I L+ I+ Q A+ G+ RTFQ R F SMT + Sbjct: 42 PNGAGKTTVFNCISGFYRPTSGEIMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVV 101 Query: 91 ENVMVGA-------FLNERGVGPA-RRTAQEL-------LDFVNLGRFADKPAGSMTISE 135 EN++V L+ PA R++ QE LD + L A++ AG+++ Sbjct: 102 ENLLVAQHQQVNTNLLSGLLKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGL 161 Query: 136 QRRLAVARA 144 QRR+ +AR Sbjct: 162 QRRVEIARC 170 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 84.3 bits (207), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 66/131 (50%), Gaps = 15/131 (11%) Query: 31 PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90 PNGAGKTT+FN I G ++G I D I ++P + GI RTFQ R F MT L Sbjct: 36 PNGAGKTTVFNLITGLLRASSGSIRFNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLL 95 Query: 91 ENVMVG-----------AFLNERGV----GPARRTAQELLDFVNLGRFADKPAGSMTISE 135 ENV+VG LN G AR A ELL +V L A A S++ E Sbjct: 96 ENVVVGMHDHLNYGVASMLLNLGGFRNAEKEARERALELLSWVRLDHKAHMLADSLSYGE 155 Query: 136 QRRLAVARARA 146 QR+L ARA A Sbjct: 156 QRKLEFARALA 166 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 19/149 (12%) Query: 17 LSLAAFITRSNSDR----PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARI 72 L+ +F R + R PNGAGK++M N I G P G I +GM P AR Sbjct: 58 LTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQ 117 Query: 73 GIGRTFQVARTFTSMTALENVMV--------GAFLNERGVGPA-------RRTAQELLDF 117 GI RTFQ F MT L+N+M G N G A RR ++++DF Sbjct: 118 GIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDF 177 Query: 118 VNLGRFADKPAGSMTISEQRRLAVARARA 146 + + P G + Q+R+ +ARA A Sbjct: 178 LEIQHIRKTPVGRLPYGLQKRVELARALA 206 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.130 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 642,787 Number of extensions: 22034 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 24 Length of query: 236 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 154 Effective length of database: 1,231,600 Effective search space: 189666400 Effective search space used: 189666400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)