BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0040.p
         (197 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogen...   161   4e-41
gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogen...   159   1e-40

>gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  161 bits (407), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 105/164 (64%), Gaps = 4/164 (2%)

Query: 30  WPLRFVMPHVKGLRPRWMIRLGLWMYDHIGGRITLPHSAGIALDQMSAPSGLRADITRGF 89
           WPLRFVMPH +G RP W+IRLG+++YDH+  R  LP S  + L + ++ + L+A  TRGF
Sbjct: 94  WPLRFVMPHDQGQRPAWLIRLGMFLYDHLARRELLPGSRALDLRRHASGAPLKAQFTRGF 153

Query: 90  AYSDAWVDDARLVILNLLSAQEHGAGIFARTRLVDAKRSNGQWQCEVENTVTGVRQQLTA 149
            YSD WVDDARLV+LN + A E GA I  RTR     R +  WQ  V     G   Q+ A
Sbjct: 154 VYSDGWVDDARLVVLNAMDAAEKGAHIMTRTRCESLTRQDNGWQA-VLRREDGHAMQVRA 212

Query: 150 RAVVNTAGPWVAKMDQLLNPARQDKAHAAVKLVRGSHIVVPRLF 193
           R VVN AGPWVA   Q L  A    +  +V+LV+GSHIVVPRLF
Sbjct: 213 RCVVNAAGPWVA---QFLGGAAHVHSSKSVRLVKGSHIVVPRLF 253


>gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 510

 Score =  159 bits (403), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 105/166 (63%), Gaps = 5/166 (3%)

Query: 30  WPLRFVMPHVKGLRPRWMIRLGLWMYDHIGGRITLPHSAGIALDQMSAPSGLRADITRGF 89
           WPLRFVMPH    RP WMIR GL+MYDH+  R  LP S G  L +  A   L+ D  +GF
Sbjct: 84  WPLRFVMPHDANQRPAWMIRAGLFMYDHLAKREILPPSEGANLARHDAGQPLKGDYRKGF 143

Query: 90  AYSDAWVDDARLVILNLLSAQEHGAGIFARTRLVDAKRSNGQWQCEVENTVTGVRQQ--L 147
            YSD WVDDARLV+LN + AQE GA I  RT+ + A+R    W   +E+   G  QQ  +
Sbjct: 144 VYSDGWVDDARLVVLNAMDAQERGARILTRTKCISARREGDIWHAVLEHQREGGVQQEEV 203

Query: 148 TARAVVNTAGPWVAKMDQLLNPARQDKAHAAVKLVRGSHIVVPRLF 193
            ARA+VN AGPW A+  Q +    Q K+  +++L++GSHIVV R+F
Sbjct: 204 RARAIVNAAGPWAARFAQAVP---QAKSGRSLRLIKGSHIVVKRMF 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 597,678
Number of extensions: 23731
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 117
Effective length of database: 1,241,070
Effective search space: 145205190
Effective search space used: 145205190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)