BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0037.p (397 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312387|ref|YP_003776479.1| sugar ABC transporter periplasm... 630 0.0 gi|300313089|ref|YP_003777181.1| glycerol-3-phosphate ABC transp... 122 6e-29 gi|300311925|ref|YP_003776017.1| glycerol-3-phosphate ABC transp... 62 1e-10 >gi|300312387|ref|YP_003776479.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 630 bits (1626), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/369 (82%), Positives = 333/369 (90%) Query: 1 MRRVILKSIAALAVAGAFAAPAFAANPVELTFYYPVAVGGPITKTIDGMVADFEKQNPDV 60 MRR +LKS+AALAV+ AF P AANPVE++FYYPVAVGG +TKTID MVADFEK +PD+ Sbjct: 1 MRRTVLKSLAALAVSAAFCTPVLAANPVEISFYYPVAVGGAVTKTIDSMVADFEKAHPDI 60 Query: 61 KIKAVYAGTYQESIVKALTAFKSGTPPTLAVLLSTDLFTLIDENAIVPIDGLANKPEDKK 120 K+KA+YAGTYQESIVKALTAFK GTPPTLAVLLSTDLFTLIDENAI+PID LA+ EDKK Sbjct: 61 KVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAILPIDSLASSAEDKK 120 Query: 121 WIEGFYKGFMENSQTGGKTWGIPFQRSTIVMFWNKNLFKEAGLNPDKAPANWADTITYAK 180 WI GFYKGFMENSQT GKTWGIPFQRSTIVM++NK LFKEAGLNPDKAPANW + + AK Sbjct: 121 WIAGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKALFKEAGLNPDKAPANWNEMVEAAK 180 Query: 181 KLTKSDANGNVSQWGLKIPSTGFTYWMFQGLTTPNDTTLMNAAGTKTYFDKPAAVESLQY 240 KLTK DA GNV+QWG+KIPSTGF YWMFQ +T NDT LMN+AGTKTYFDKP AV++LQ+ Sbjct: 181 KLTKRDAAGNVTQWGVKIPSTGFGYWMFQAMTASNDTLLMNSAGTKTYFDKPGAVQALQH 240 Query: 241 WVDLSARHKVMPGGVIEWGTTPKDFLEQKAAMVWTTTGNLTNIRANASFPFGVAMLPANK 300 WVDL+ + KVMP G IEWGTTPKDFLEQKAAMVWTTTGNLTNIR NASFPFGVAMLP K Sbjct: 241 WVDLTTKEKVMPAGSIEWGTTPKDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPGIK 300 Query: 301 HPGSPTGGGNFYVFNKTSPEQQQAAVKFIRFATEPARAAQWSIATGYVAPRQDAWDTPEM 360 HPGSPTGGGNFYVFNKTSP +QQAA+KFIRFATEPARAAQWSIATGYVAPRQDAWDTPEM Sbjct: 301 HPGSPTGGGNFYVFNKTSPAEQQAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTPEM 360 Query: 361 KKYLQEVPA 369 KKYLQ+VPA Sbjct: 361 KKYLQDVPA 369 >gi|300313089|ref|YP_003777181.1| glycerol-3-phosphate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 437 Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 97/391 (24%), Positives = 177/391 (45%), Gaps = 35/391 (8%) Query: 5 ILKSIAALAVAGAFAAPAFAANPVELTFYYPVAVGGPITKTIDGMVADFEKQNPDVKIKA 64 ++K++ A V + AFAA + T+++ + G + + ++ + DF K D KI Sbjct: 3 MMKTLIATGVLATITSSAFAATAI--TWWHSMT--GALGERVNALADDFNKTQGDYKIVP 58 Query: 65 VYAGTYQESIVKALTAFKSGTPPTLAVLLSTDLFTLI-DENAIVPIDGLANKPEDK---- 119 VY GTY ES+ A+ A+++G P + + T+I + A+ P+ + ++ +K Sbjct: 59 VYKGTYDESMSAAIAAYRAGNAPAILQVFEVGTATMIYAKGAVKPVYEVMHQAGEKFDQN 118 Query: 120 ---KWIEGFY---KGFMENSQTGGKTWGIPFQRSTIVMFWNKNLFKEAGLNPDKAPANWA 173 + G+Y KG M PF ST +MF+NK++F +AGL+P+K P W Sbjct: 119 AYVPAVAGYYSTPKGMMS----------FPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQ 168 Query: 174 DTITYAKKLTKSD-ANGNVSQWGLKIPSTGFTYWMFQGLTTPNDTTLMNAAGTKTYFDKP 232 + + A K+ S A + W + F+ W L T N+ + + P Sbjct: 169 EFVGMAAKIKASGAACAYTTTWQSWVHLESFSTWHNVELATKNNG--FGGLDARLKMNSP 226 Query: 233 AAVESLQYWVDLSARHKVMPGGVIEWGTTPKDFLEQKAAMVWTTTGNLTNIRANASFPFG 292 V ++ + + + G + F + A++ ++ +IR NA F FG Sbjct: 227 LHVRHIENLSNWAKQGYFTYAGRKDEANAK--FNAGECAIITGSSSAYADIRKNAKFKFG 284 Query: 293 VAMLP-ANKHPGSP----TGGGNFYVFNKTSPEQQQAAVKFIRFATEPARAAQWSIATGY 347 VA LP N G+P GG + +V N ++ + KF + ++P AA+W TGY Sbjct: 285 VATLPYYNDVQGAPQNTVIGGASLWVMNGKKADEYKGVAKFFSYLSKPEVAAKWHQDTGY 344 Query: 348 VAPRQDAWDTPEMKKYLQEVPAXTPEMKKYL 378 + + A++ + + + P +K+ + Sbjct: 345 LPVTKAAYELTKSSGFYERNPGTDVAVKQMI 375 >gi|300311925|ref|YP_003776017.1| glycerol-3-phosphate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 452 Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/326 (19%), Positives = 127/326 (38%), Gaps = 33/326 (10%) Query: 40 GPITKTIDGMVADFEKQNPDVKIKAVYAGTYQESIVKALTAFKSGTPPTLAVLLSTDLFT 99 G + + + + A F +++ V GTY++++ K + +++ P L + Sbjct: 48 GAMAQAVRQLCAGFNAAQQQHQVRCVVPGTYEQTMQKTIATYRAAQQPALVEIYDVGTLD 107 Query: 100 LIDENAIVPIDGL-ANKPEDKKWIEGF--YKGFMENSQTGGKTWGIPFQRSTIVMFWNKN 156 ++ AIVP+ L A+ W + +G+ ++Q G+ +PF ST V++ N + Sbjct: 108 MMLSGAIVPVHQLMADHGYRVDWQDYLPAIRGYYTDAQ--GQFDSLPFNVSTAVLYLNTD 165 Query: 157 LFKEAGLNPDKAPANWADTITYAKKLTKSDANGNVSQWGLKIP-STGFTYWMF------- 208 ++AG++ P+ W + A++L + G P + F W+ Sbjct: 166 QLRQAGIS--TLPSTWRELEQTARQLRAA---------GQTCPLVSDFNPWILLEQVSTI 214 Query: 209 QGLTTPNDTTLMNAAGTKTYFDKPAAVESLQYWVDLSARHKVMPGGVIEWGTTPKDFLEQ 268 +G + FD+ + +Q +H ++ G F Sbjct: 215 EGAPIADHDNGHQGLAAHYLFDQGLHLRFMQQLQRWHQQHLLVEAAATRTGRHTLAFTTG 274 Query: 269 KAAMVWTTTGNLTNIRANASFPFGVAMLP------ANKHPGSPTGGGNFYVFNKTSPEQQ 322 + AM++ +T I A + P VA+ P +H P GG + +V + Sbjct: 275 ECAMLFDSTSAWHAI-ARSGLPH-VAVRPLPIHADGQRHNSVP-GGASLWVMKGFDRQVY 331 Query: 323 QAAVKFIRFATEPARAAQWSIATGYV 348 A FI + +P + TGY+ Sbjct: 332 AAVAAFIAYLQQPQNQRLLARQTGYL 357 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,295,567 Number of extensions: 54770 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 3 Length of query: 397 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 310 Effective length of database: 1,207,925 Effective search space: 374456750 Effective search space used: 374456750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)