BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0033.p (277 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease ... 433 e-123 gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease ... 113 1e-26 gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC tra... 105 3e-24 gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease ... 96 3e-21 gi|300310303|ref|YP_003774395.1| sugar ABC transporter permease ... 90 2e-19 >gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 276 Score = 433 bits (1114), Expect = e-123, Method: Compositional matrix adjust. Identities = 239/272 (87%), Positives = 260/272 (95%) Query: 6 TNPFGERNKILETVAAWVLGLLWLLPLIYAIWTAFHPAEFATRFSLTAPLTLQNFVNAWN 65 T+PF +R++ LETV+AWVL LLWLLPL+YA+WTAFHPA FATRF+L APLTLQNFVNAW Sbjct: 5 TSPFADRHRALETVSAWVLALLWLLPLLYALWTAFHPAAFATRFTLDAPLTLQNFVNAWQ 64 Query: 66 AAPFPRYFLNTFMLVTMILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLMQLMVMPDILI 125 AAPFPRYFLNTF+LVTMIL AQ+VLAT+AAYAF+R+ FRG N+MFMLVL+QLMVMPDILI Sbjct: 65 AAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILI 124 Query: 126 VENYNTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAMQVLW 185 VENY TMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASA Q+L Sbjct: 125 VENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILM 184 Query: 186 KVYVPLAKPIYLAFGLVSISTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSII 245 +VYVPLA+PIY+AFGLVS+STHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSII Sbjct: 185 QVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSII 244 Query: 246 TSATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 277 T+ATLMTSAPLLLAFLLFQRQFVQSFMRAGIR Sbjct: 245 TAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 >gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 132/258 (51%), Gaps = 25/258 (9%) Query: 26 LLWLLPLIYAIWTAFH-------------PAEFATRFSLTAPLTLQNFVNAWNAAPFPRY 72 L+WLLP++ A+ T+ P +FA L+N+ A A+P Y Sbjct: 26 LIWLLPMLAALVTSIRSNDELMAGNYWGWPQDFAM---------LENYREALTASPMLHY 76 Query: 73 FLNTFMLVTMILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLMQLMVMPDILIVENYNTM 132 F N+ ++ ++ + LA MA +A S Y+FRG+ ++F + V IL++ + Sbjct: 77 FWNSCLITIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFVACNFVPQQILMIPVRDLS 136 Query: 133 NLLGLRDTILSIGLPYFA--SAFGIFLLRQTFKTVPRELDEAATVEGASAMQVLWKVYVP 190 LGL +TI + L + A + F LR K +P E+ EAA +EGAS V +++ +P Sbjct: 137 LSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLP 196 Query: 191 LAKPIYLAFGLVSISTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSIITSATL 250 L +P A ++ + WN++ W L++T + P+TVG+ W+++++ ++ Sbjct: 197 LIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALRG-QWTTAWNLVSAGSI 255 Query: 251 MTSAPLLLAFLLFQRQFV 268 + + P ++ F + Q+QFV Sbjct: 256 LAALPSVILFFVMQKQFV 273 >gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 105 bits (263), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 108/194 (55%), Gaps = 1/194 (0%) Query: 82 MILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLMQLMVMPDILIVENYNTMNLLGLRDTI 141 +I + ++ ++ ++A+A +RF G + F ++ + LM+ ++ I Y ++ LG+ ++ Sbjct: 88 IIAIGKISISMLSAFAIVYFRFPGRGLFFWMIFVTLMLPVEVRITPTYQVVSDLGMLNSY 147 Query: 142 LSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAMQVLWKVYVPLAKPIYLAFGL 201 + +P ASA FL RQ F TVP EL EAA ++GA ++ L V PL++ +A + Sbjct: 148 AGLSVPLIASATATFLFRQFFLTVPDELAEAARIDGAGPLRFLKDVLWPLSRTNVIALFV 207 Query: 202 VSISTHWNNFLWPLIVTNSVESRPLTVGLQ-VFSSTDQGVDWSIITSATLMTSAPLLLAF 260 + WN +LWPLI+ P+ +G++ + S D V+W+++ + ++ P L Sbjct: 208 IMFIYGWNQYLWPLIIATDTSMYPIGIGIKTLISGGDSAVEWNLVMATMILAMLPPGLVV 267 Query: 261 LLFQRQFVQSFMRA 274 ++ Q+ FV+ + + Sbjct: 268 VVMQKWFVKGLVDS 281 >gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 96.3 bits (238), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 8/244 (3%) Query: 38 TAFHP-----AEFATRFSLTAPLTLQNFVNAWNAAPFPRYFLNTFMLVTMILVAQMVLAT 92 TAF P ++ F + AP TL +F +P + LNT ++ + A + + Sbjct: 48 TAFKPDNELLSQSGNPFWVIAP-TLAHFKKLLFDTQYPAWLLNTVIVSVVSTFASLAASV 106 Query: 93 MAAYAFSRYRFRGDNIMFMLVLMQLMVMPDILIVENYNTMNLLGLRDT--ILSIGLPYFA 150 AAYA R RF+G + + + + ++ P IL + + LGL DT L + P F Sbjct: 107 FAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFL 166 Query: 151 SAFGIFLLRQTFKTVPRELDEAATVEGASAMQVLWKVYVPLAKPIYLAFGLVSISTHWNN 210 F +LL F+++P EL+E A ++GA+ ++L K+ +PLA P ++ G+ + + WN Sbjct: 167 IPFCTWLLMGYFRSIPYELEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNE 226 Query: 211 FLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSIITSATLMTSAPLLLAFLLFQRQFVQS 270 F++ L +S E + + VG+ W + + L+ S P+ + + F +V Sbjct: 227 FIYALTFISSSEVKTVPVGIVTELVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSG 286 Query: 271 FMRA 274 A Sbjct: 287 MTGA 290 >gi|300310303|ref|YP_003774395.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 272 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 56 TLQNFVNAWNAAPFPRYFLNTFMLVTMILVAQMVLATMAAYAFSRYRFRGDNIMFMLVLM 115 TL N+ + + ++N+ + V M V +++A AAYAFSRYRF GD MF +L Sbjct: 52 TLNNYKTIFTDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLT 111 Query: 116 QLMVMPDILIVENYNTMNLLGLRDTILSIGLPY--FASAFGIFLLRQTFKTVPRELDEAA 173 M P + ++ + + +GL DT +++ L + F +++L VPRE+DE A Sbjct: 112 NRMTPPAVFLLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETA 171 Query: 174 TVEGASAMQVLWKVYVPLAKPIYLAFGLVSISTHWNNFLWPLIVTNSVESRPLTVGLQVF 233 ++G S + ++++PL K W L +T SV ++P++ + Sbjct: 172 YIDGFSFPRFFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLT-SVNAKPIS-AIMTR 229 Query: 234 SSTDQGVDWSIITSATLMTSAPLLLAFLLFQRQFVQSF 271 +++ G+DW I+ +A ++T P L + + F Sbjct: 230 TASAAGMDWGILAAAGVLTIVPGALVIWFVRNHIAKGF 267 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 694,308 Number of extensions: 24174 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 10 Length of query: 277 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 193 Effective length of database: 1,222,130 Effective search space: 235871090 Effective search space used: 235871090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)