BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0027.p
         (68 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312391|ref|YP_003776483.1| hypothetical protein Hsero_3091...    99   9e-23

>gi|300312391|ref|YP_003776483.1| hypothetical protein Hsero_3091
          [Herbaspirillum seropedicae SmR1]
          Length = 67

 Score = 98.6 bits (244), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 1  MFFSKLFTSYESEATKFIAELKAKNPNLEEEQRAGRALLWDKTPLDLDKTARETESRVKQ 60
          M F K  T+Y SE T+FI ELK KNP LEE QRAGRALLWDK PLDLDKTAR+  SRV Q
Sbjct: 1  MLFGKK-TTYVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDKTARDKASRVAQ 59

Query: 61 QSYVYQNH 68
          Q YVYQ+H
Sbjct: 60 QPYVYQSH 67


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.126    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 162,664
Number of extensions: 4358
Number of successful extensions: 6
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 68
Length of database: 1,619,870
Length adjustment: 40
Effective length of query: 28
Effective length of database: 1,430,470
Effective search space: 40053160
Effective search space used: 40053160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)