BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0026.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312392|ref|YP_003776484.1| hypothetical protein Hsero_3092...   512   e-146

>gi|300312392|ref|YP_003776484.1| hypothetical protein Hsero_3092
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  512 bits (1318), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/284 (87%), Positives = 269/284 (94%)

Query: 5   AGTPSSDAAELTLEGQPDSTPNVVDGVAFAKLYGEPLFKLPTDLYIPPDALEVFLEAFQG 64
              PS+DA ++T  GQ DSTP+V+DGVA A+LYGEPLF+LP DLYIPPDALEVFLEAFQG
Sbjct: 15  GAEPSADAIDITPAGQQDSTPDVIDGVALARLYGEPLFQLPNDLYIPPDALEVFLEAFQG 74

Query: 65  PLDLLLYLIRKQNFNILDIPMAQVTLQYLEYVEQIRKHNLELAAEYLLMAAMLIEIKSRM 124
           PLDLLLYLIRKQNFNILDIP+AQVT QYLEYV+QIRK NLELAAEYLLMAAMLIEIKSRM
Sbjct: 75  PLDLLLYLIRKQNFNILDIPLAQVTAQYLEYVDQIRKQNLELAAEYLLMAAMLIEIKSRM 134

Query: 125 LLPVRKADSGEEAEDPRAELVRRLLEYEQMKLAAQELDSLPQVGRDYVRTQVHIEQTVVV 184
           LLP +KA+SGEE EDPRAELVRRLLEYEQ+KLAAQELD LPQVGRDYVRTQVHIEQTVV 
Sbjct: 135 LLPAKKAESGEEPEDPRAELVRRLLEYEQIKLAAQELDQLPQVGRDYVRTQVHIEQTVVT 194

Query: 185 RWPEVNLDDLQAVWADIMRRAKLTEHHHISREELSVREHMTGILRRLRSARFVEFADLFD 244
           RWPEVN+DDL+AVWADI+RRAKLT+HHHISREELSVREHMTGILRRL+SARFVEF+DLFD
Sbjct: 195 RWPEVNMDDLKAVWADILRRAKLTQHHHISREELSVREHMTGILRRLQSARFVEFSDLFD 254

Query: 245 PARGVPVLVVNFIALLELAKETLIEITQAEAFAPIYVRLSYSPS 288
           P+RGVPV+VVNFIALLELAKETLIEITQAEAFAPIYVRLSYSPS
Sbjct: 255 PSRGVPVVVVNFIALLELAKETLIEITQAEAFAPIYVRLSYSPS 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 801,659
Number of extensions: 30763
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)