BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0023.p (256 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312464|ref|YP_003776556.1| Mn2+/Zn2+ ABC transporter ATPas... 89 3e-19 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 89 3e-19 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 87 9e-19 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 87 1e-18 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 84 1e-17 >gi|300312464|ref|YP_003776556.1| Mn2+/Zn2+ ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 12/238 (5%) Query: 1 MTAALLLQVEALTLRAGDASLLENFDWQARSGEFWCVLGKNGIGKSTLLHAVAGLLPPTS 60 M AA+ L E LT+ L + + G V+G NG GKSTLL ++ GL+ Sbjct: 1 MNAAISL--ENLTVSYRRHPALHHVNGAFERGSLTAVVGPNGAGKSTLLKSMLGLVRCND 58 Query: 61 GRVLSPEGDIKHATPQQLALWRGLQAQQQLD-AFPCSVLDSVMAGLHPYRPGWGWPDEAD 119 GRVL+ H +++A L Q ++D +FP SVLD V+ G + WG D A Sbjct: 59 GRVLT------HVDARRIAY---LPQQAEIDRSFPISVLDCVLLGYWQAKGNWGGIDAAM 109 Query: 120 RRAALHALQRLDMASYADADVMRLSGGERQRVAMATLMLQAPQLYLLDEPASHQDVAAQQ 179 A AL + + ++ V LS G+ QRV A ++LQ ++ LLDEP + D Sbjct: 110 CARARQALAAVGLDGFSGRPVASLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTG 169 Query: 180 LVMRTLKELADDDHAVVATMHDINLATRFASHVLLIAEGKVWQGRAADILRPDLLEAA 237 ++R + + V+A +HD + R LL+A V G+ A+++ + L+ A Sbjct: 170 DLLRIISAWHAERRTVIAVLHDHDQVRRAFPQTLLLARHVVAWGQTAEVMCEENLQRA 227 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 6 LLQVEALTLRAGDASLLENFDWQARSGEFWCVLGKNGIGKSTLLHAVAGLLPPTSGRVLS 65 ++++ +T R G +L G+ ++G++G GKST+L + GL G + Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 66 PEGDIKHATPQQLALWRGL-QAQQQLDAFP-CSVLDSVMAGLHPYRPGWGWPDEADRRAA 123 + H + L + + Q + FP +V +++M L P R E R A Sbjct: 63 AGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIM--LSP-RIVKKTATETARETA 119 Query: 124 LHALQRLDMASYADADVMRLSGGERQRVAMATLMLQAPQLYLLDEPASHQDVAAQQLVMR 183 + L+++ + DA +LSGG++QRVA+A + PQ+ L DE S D V++ Sbjct: 120 IKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLK 179 Query: 184 TLKELADDDHAVVATMHDINLATRFASHVLLIAEGKVWQGRAAD 227 ++ELA ++ H++ A R A + + +GKVW+ R ++ Sbjct: 180 VMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSE 223 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 87.4 bits (215), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 11/209 (5%) Query: 17 GDASLLENFDWQARSGEFWCVLGKNGIGKSTLLHAVAGLLPPTSGRVLSPEGDIKHATPQ 76 G+A + N D++ ++G+F +LG +G GKST L +AGL P+SG + D+ P Sbjct: 14 GEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVTQLPPA 73 Query: 77 QLALWRGLQAQQQLDAFP-CSVLDSVMAGLHPYR-PGWGWPDEADRRAALHALQRLDMAS 134 Q + Q+ FP SV D+++ G+ + P G+ R A + L +A Sbjct: 74 QRKISMVFQS---YALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADI-----LGLAH 125 Query: 135 YADADVMRLSGGERQRVAMATLMLQAPQLYLLDEPASHQDVAAQQLVMRTLKELADD-DH 193 + +LSGG++QRVA+ ++ + L+DEP S+ D +Q + R ++ L + Sbjct: 126 LLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNM 185 Query: 194 AVVATMHDINLATRFASHVLLIAEGKVWQ 222 +V HD A A V+L+ EG++ Q Sbjct: 186 TMVYVTHDQTEAMSMADQVILLREGRIEQ 214 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 21/227 (9%) Query: 6 LLQVEALTLRAGDASLLENFDWQARSGEFWCVLGKNGIGKSTLLHAVAGLLPPTSGRVLS 65 +++V L R G A +L D + R+ E CV+G +G GKST L + GL + G + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 66 PEGDIKHATPQQLALWRGLQAQ-----QQLDAFP-CSVLDS-VMAGLHPYRPGWGWPDEA 118 EG +K P+ L+A+ Q+ + FP +VL++ +MA + + + Sbjct: 61 -EG-VKLNDPK--VNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKL-------S 109 Query: 119 DRRAALHA---LQRLDMASYADADVMRLSGGERQRVAMATLMLQAPQLYLLDEPASHQDV 175 R A L A LQ++ + DA +LSGG++QRVA+A + P++ L DEP S D Sbjct: 110 RREAVLVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDP 169 Query: 176 AAQQLVMRTLKELADDDHAVVATMHDINLATRFASHVLLIAEGKVWQ 222 V+ +K+LA++ +V H++ A + VL I +G + + Sbjct: 170 ELVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIME 216 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 13/230 (5%) Query: 6 LLQVEALTLRAGDASLLENFDWQARSGEFWCVLGKNGIGKSTLLHAVAGLLPPTSGRVLS 65 +++++ + R G ++L +Q GE ++GK+G GKST L + L +G++ S Sbjct: 4 VVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQI-S 62 Query: 66 PEGDIKHATPQQLALWRGLQAQ-----QQLDAFP-CSVLDSVMAGLHPYRPGWGWPDEAD 119 G HA L RGL+ Q + FP +VL ++ G + P + Sbjct: 63 VCGHALHAAGLDL---RGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKR---MPADQA 116 Query: 120 RRAALHALQRLDMASYADADVMRLSGGERQRVAMATLMLQAPQLYLLDEPASHQDVAAQQ 179 + A L R+ +A A A +LSGG++QRVA+A + PQL L DE S D Sbjct: 117 QTLAQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTG 176 Query: 180 LVMRTLKELADDDHAVVATMHDINLATRFASHVLLIAEGKVWQGRAADIL 229 V++ ++++A + ++ H++ A R A V+ + +G+VW+ +IL Sbjct: 177 EVLKVMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGPEIL 226 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 870,452 Number of extensions: 37879 Number of successful extensions: 453 Number of sequences better than 1.0e-08: 117 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 120 Length of query: 256 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,226,865 Effective search space: 212247645 Effective search space used: 212247645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)