BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0020.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho...    56   2e-09
gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitr...    54   1e-08

>gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 717

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 34/178 (19%)

Query: 29  VYGRQSLAG-----PG-----DFALD---MRGFGSNGDQNMVILINGVRLSENELSTALL 75
           VYG ++LAG     PG     D   D   +RGF S  D    +L++G+R     +     
Sbjct: 94  VYGARTLAGALLGVPGISSISDTRFDAFRIRGFSSAND----LLLDGMRDDPQYVRG--- 146

Query: 76  SSVPIDSVERIEIVRGGSSVLYGDGATGGTIQIITKRPAADAVHGSVVGEVGNYGLRSGR 135
               + ++ER+E++RG +SVLYG G+ GG I  I+K+P  D    + +  +G+ GL    
Sbjct: 147 ----LGNIERVEVLRGPASVLYGRGSGGGVINRISKQPGQDVASQATLS-LGSAGL---- 197

Query: 136 ASVAKGWD-----GFALNAAYSKQHADNYRDNNASNQENFSGTAQWFSNEGRFGLRVD 188
              A  W+      +AL     ++HA ++RD     ++ F+   +W S    + L+ +
Sbjct: 198 LGAALDWNRPLAPHWALRINTGREHAGSFRDTVNGTRQYFAPALKWESGRDSWLLQAE 255


>gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitrate
           transport protein [Herbaspirillum seropedicae SmR1]
          Length = 703

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 4   TVIGAEDIRNAGIDNVNEAIRKLGGVYGRQSLAGPGD-FALDM--RGFGSNGDQNMVILI 60
           TV+  ++I + G  ++ +A+R++ GV    +    G   AL++  RG          IL+
Sbjct: 73  TVVKKQEIESTGAVSIGDAMRRIPGVQSSDNSGTAGSAIALNIGVRGLAGRYSPRSTILL 132

Query: 61  NGVRLSENELSTALLSSVPI--DSVERIEIVRGGSSVLYGDGATGGTIQIITKR-PAADA 117
           +G+ ++        LS  P+  +++E I++VRGG +V +G    GG I   T+  P    
Sbjct: 133 DGIPMAVAPYGQPQLSFAPLSLNNIESIDVVRGGGAVRFGPQNVGGIINFKTRSIPTTPG 192

Query: 118 VHGSVVGEVGNYGLRSGRASVA-----KGWDGFALNAAYSKQHADNYRDNNASNQENFS 171
           + G       +YG   G          +  +GF +   YS Q    +RD +  +  +F+
Sbjct: 193 ISGDAAVRYNSYGQGGGNTQYTAFAGGQAENGFGMAFLYSGQEGSGWRDKSDEHLNDFA 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 767,144
Number of extensions: 32820
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)