BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0018.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312395|ref|YP_003776487.1| chemotaxis phosphatase [Herbasp...   290   7e-80
gi|300311340|ref|YP_003775432.1| chemotaxis phosphatase CheZ [He...    92   4e-20

>gi|300312395|ref|YP_003776487.1| chemotaxis phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  290 bits (741), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 155/246 (63%), Positives = 177/246 (71%), Gaps = 39/246 (15%)

Query: 1   MSDDVDLEALFDEISAQTLPASVAAAAPAAPAPSGATEDPL--EDQSDKPMYERLGGIVR 58
           MSDDVDLEALFDEISAQTLPA  A    A    +    +    EDQSDKPMY RLGGIVR
Sbjct: 1   MSDDVDLEALFDEISAQTLPAMTATGEEAVAQAADGAAEAAAPEDQSDKPMYARLGGIVR 60

Query: 59  LLHDSMRELGYDRSLSDVASQIGDAQGRLEHVATLTEQAANKVLNSIDAGX--------- 109
           LLHDSMRELGYDRSL+DVASQIGDAQ RLEH+ATLTEQAANKVLN++D+G          
Sbjct: 61  LLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSGMPAQDRLQEQ 120

Query: 110 ------RWARLFAGQMNIDEFKNLANDSKKFSSAVIEATEVEKARMLEIMMAQDFX---- 159
                 RW+RL+AGQM+IDEFK LA DS+KFS+AV+E+TE EKARMLEIMMAQDF     
Sbjct: 121 AKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIMMAQDFQDITG 180

Query: 160 ------------------RLLGDNAPPEVKAAIGADKPVELLNGPSAPGSAMAQNDVDDL 201
                             +LL DNAPPEV+A I A+KPV L+NGP++PG+AM Q DVDDL
Sbjct: 181 QLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNGPASPGTAMGQTDVDDL 240

Query: 202 LANLGF 207
           L +LGF
Sbjct: 241 LDSLGF 246


>gi|300311340|ref|YP_003775432.1| chemotaxis phosphatase CheZ
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 91.7 bits (226), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 91/197 (46%), Gaps = 46/197 (23%)

Query: 52  RLGGIVRLLHDSMRELGYDRSLSDVASQIGDAQGRLEHVATLTEQAANKVLN-------- 103
           R+G + R LHDS+R LG+DR L   AS + DA+ RLE+VA +TEQAA +VLN        
Sbjct: 25  RIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATELASPL 84

Query: 104 -------SIDAGXRWARLFAGQMNIDEFKNLANDSKKFSSAVIEATEVEKARMLEIMMAQ 156
                  + D   +W    AG  +    + LA  +  F +   E + V K ++L+IMMAQ
Sbjct: 85  QDRISEGATDLKAQWDAATAGSFSEAHCRELAARTSSFLAQASEDSSVTKQQLLDIMMAQ 144

Query: 157 DFXRLLG----------------------DNAPPEVKAAIGADKPVELLNG----PSAPG 190
           DF  L G                      D AP E K      +   LLNG    P+   
Sbjct: 145 DFQDLTGQVIKRVTKLAHDLESQLVQLLVDYAPSEAKR-----EDTGLLNGPQIDPTGKD 199

Query: 191 SAMAQNDVDDLLANLGF 207
               Q  VDDLL +LGF
Sbjct: 200 VIANQGQVDDLLESLGF 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,694
Number of extensions: 19100
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)