BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0014.p (248 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312397|ref|YP_003776489.1| cys regulon transcription regul... 480 e-137 gi|300310987|ref|YP_003775079.1| cys regulon transcription regul... 253 1e-68 gi|300313657|ref|YP_003777749.1| LysR family transcription regul... 59 4e-10 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 57 1e-09 gi|300310484|ref|YP_003774576.1| LysR family transcription regul... 57 1e-09 >gi|300312397|ref|YP_003776489.1| cys regulon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 480 bits (1235), Expect = e-137, Method: Compositional matrix adjust. Identities = 230/248 (92%), Positives = 242/248 (97%) Query: 1 VLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKYPKVRLS 60 VLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARY+LPKVVQAFTQKYPKV LS Sbjct: 66 VLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYPKVHLS 125 Query: 61 LLQGNPKQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVMVVPPEHPLLKSKNLS 120 LLQGNPKQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHV+VVPP+HPLL+SK+L+ Sbjct: 126 LLQGNPKQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQSKSLT 185 Query: 121 LEEIAGYPLITYDAAFSGRSKIDHAFSLRDLKPDIVLEAIDADVIKTYVELGMGVGIIAG 180 LEEIA PLITYD+AFSGRSKIDHAFSLR LKPD+VLEAIDADVIKTYVELGMGVGIIAG Sbjct: 186 LEEIAANPLITYDSAFSGRSKIDHAFSLRQLKPDVVLEAIDADVIKTYVELGMGVGIIAG 245 Query: 181 MAFDADRDRGLRSLPAGHLFGTNVSRVALKQGAYLRSYVYTFIELLAPTLNRKLIGQVME 240 +AFDA+RDRGLR++PAGHLFGTNVSRVALKQGAYLR YVYTFIELLAPTLNRKLI QVME Sbjct: 246 IAFDAERDRGLRAIPAGHLFGTNVSRVALKQGAYLRGYVYTFIELLAPTLNRKLIAQVME 305 Query: 241 GEKDMYEL 248 GEKDMYEL Sbjct: 306 GEKDMYEL 313 >gi|300310987|ref|YP_003775079.1| cys regulon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 253 bits (646), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 118/232 (50%), Positives = 163/232 (70%) Query: 1 VLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKYPKVRLS 60 +L VE ++ E + L+R KE+A SG+ +IATTHTQARY LP+VVQAF +P+VR++ Sbjct: 66 ILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFPQVRIA 125 Query: 61 LLQGNPKQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVMVVPPEHPLLKSKNLS 120 L Q P+ I E V + +ADI IATE L+ + LVS PCY W HV+VVP HPLL + +S Sbjct: 126 LQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLGLEQVS 185 Query: 121 LEEIAGYPLITYDAAFSGRSKIDHAFSLRDLKPDIVLEAIDADVIKTYVELGMGVGIIAG 180 LE++ +PLITYD F+GR ID AF ++PDIVL A+D+DVI+ YV LGMGVG++A Sbjct: 186 LEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGVGLVAS 245 Query: 181 MAFDADRDRGLRSLPAGHLFGTNVSRVALKQGAYLRSYVYTFIELLAPTLNR 232 MA D + + + ++ A HLF N++R+A+++GAYLR Y + FI+ AP L R Sbjct: 246 MAVDQGKHQEMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPELKR 297 >gi|300313657|ref|YP_003777749.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 58.5 bits (140), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 8/171 (4%) Query: 16 KRIGKEFAAHDS---GSFTIATTHTQARYSLPKVVQAFTQKYPKVRLSLLQGNPKQITEM 72 +RIG E AA G +A T A +P ++ F +++ +R L GN + + Sbjct: 111 ERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLSVGNAMHVAQQ 170 Query: 73 VRNDQADIAIATEALASGEGLVSLPCYQWEHVMVVPPEHPLLKSKNLSLEEIAGYPLITY 132 +R D+ + T +A + + + V+ P H L K +SL E+A YPL Sbjct: 171 IREGAVDLGL-TFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSELAPYPLAMP 229 Query: 133 DAAFSGRSKIDHAFSLRD--LKPDIVLEAIDADVIKTYVELGMGVGIIAGM 181 + R ID S R+ L+P + ++I A + +V G G+G A + Sbjct: 230 KKTITMRRLIDACCSRRNVLLEPTLAADSISA--LLCFVMAGQGIGFSAAL 278 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 28 GSFTIATTHTQARYSLPKVVQAFTQKYPKVRLSLLQGNPKQITEMVRNDQADIAIATEAL 87 G +IA T LP+++QA++ +YP R+ +L + E V + + I Sbjct: 93 GDVSIACVPTVGVQYLPRILQAYSARYPHNRIKILDHASSAVAEAVLRREVEFGIHIAGE 152 Query: 88 ASGEGLVSLPCYQWEHVMVVPPEHPLLKSKNLSLEEIAGYPLITYDAAFSGRSKID---- 143 E L+S+ + +V++ P +HPL + + ++ ++ YPLI S R+ +D Sbjct: 153 HHPE-LISVALTEDRYVLICPKDHPLARRRRIAWRQLQSYPLIFAGEVSSNRALLDPTLK 211 Query: 144 -HAFSLRDL 151 + F+LR Sbjct: 212 ANGFALRSF 220 >gi|300310484|ref|YP_003774576.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 11/192 (5%) Query: 3 RSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKYPKVRLSLL 62 R + +E+D ++ + K G + + A LP V+ K+P +R+ ++ Sbjct: 75 REAQQAREELDAIRGLAK-------GVIKVGAVGSIASLVLPLAVRGVLDKWPNLRVEII 127 Query: 63 QGNPKQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHV--MVVPPEHPLLKSKNLS 120 +G ++ E + + D+A++T EG+ ++ W + +V P+HPL + ++ Sbjct: 128 EGVWDRLVEGLLTHEIDLALSTSG-GQTEGVAAIADCCWTDLSYVVAAPDHPLRQQGRIA 186 Query: 121 LEEIAGYPLITYDAAFSGRSKIDHAFSLRDLK-PDIVLEAIDADVIKTYVELGMGVGIIA 179 LE+ G + F+ L P+I +E+ V+K+ V +G ++ Sbjct: 187 LEQTLGQRWALTPKGTGPYLHVQETFARHGLPMPEIAVESRSVTVLKSLVARCGFIGWMS 246 Query: 180 GMAFDADRDRGL 191 G FD +R G+ Sbjct: 247 GPMFDTERQAGV 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 756,594 Number of extensions: 31773 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 8 Length of query: 248 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 165 Effective length of database: 1,226,865 Effective search space: 202432725 Effective search space used: 202432725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)