BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0013.p
         (72 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312397|ref|YP_003776489.1| cys regulon transcription regul...   134   2e-33
gi|300310987|ref|YP_003775079.1| cys regulon transcription regul...    91   2e-20

>gi|300312397|ref|YP_003776489.1| cys regulon transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  134 bits (336), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/65 (96%), Positives = 65/65 (100%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MNLHQFRFVREAVRQN+NLTEAAKAL+TSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT
Sbjct: 1  MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60

Query: 61 EPGRA 65
          EPGRA
Sbjct: 61 EPGRA 65


>gi|300310987|ref|YP_003775079.1| cys regulon transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score = 90.5 bits (223), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 50/65 (76%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MN  Q R +REA R  +NLTE A  LFTSQPGVS+ I ELEEELGV+IF R+GKR+ GLT
Sbjct: 1  MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60

Query: 61 EPGRA 65
          EPG+ 
Sbjct: 61 EPGKG 65


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 193,379
Number of extensions: 5461
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 72
Length of database: 1,619,870
Length adjustment: 44
Effective length of query: 28
Effective length of database: 1,411,530
Effective search space: 39522840
Effective search space used: 39522840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)