BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0010.p
         (564 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312399|ref|YP_003776491.1| sulfite reductase subunit beta ...  1060   0.0  

>gi|300312399|ref|YP_003776491.1| sulfite reductase subunit beta
           [Herbaspirillum seropedicae SmR1]
          Length = 565

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/565 (89%), Positives = 537/565 (95%), Gaps = 1/565 (0%)

Query: 1   MYRYDQYDHLIVKERVAQYRDQVRRRLSDELIEDEFRILRLQNGLYLQRHAYMLRIAVPY 60
           MYRYDQYDHLIVKERVAQYRDQVRRRLSDEL EDEFRILRLQNGLYLQRHAYMLRIA+PY
Sbjct: 1   MYRYDQYDHLIVKERVAQYRDQVRRRLSDELAEDEFRILRLQNGLYLQRHAYMLRIAIPY 60

Query: 61  GLLASRQVRMFAHIARKYDRGYGHFTTRQNIQFNWIKLEESPDILAELATVEMHAIQTSG 120
           G+LAS Q+R FA IA KYDRGYGHFTTRQNIQFNWIKLEESP+IL +LA+VEMHAIQTSG
Sbjct: 61  GMLASNQLRKFAEIAVKYDRGYGHFTTRQNIQFNWIKLEESPEILEQLASVEMHAIQTSG 120

Query: 121 NCIRNTTSDELAGVAADEIVDPRPYAELIREWSTFHPEFAYLPRKFKIAISGSEQDRAAT 180
           NCIRNTTSDELAGVAADEIVDPRPYAELIREWSTFHPEFAYLPRKFKIAISG+ +DRAAT
Sbjct: 121 NCIRNTTSDELAGVAADEIVDPRPYAELIREWSTFHPEFAYLPRKFKIAISGAAEDRAAT 180

Query: 181 AVHDIGLHVIKNDAGEVGFRVLVGGGMGRTPILGSQIRDFLPWKHAMSYLEAILRVYNQY 240
           AVHDIGLHV+KN+AGEVGFRVLVGGGMGRTPILGS IRDFLPW+HAMSYLEAILRVYNQY
Sbjct: 181 AVHDIGLHVLKNEAGEVGFRVLVGGGMGRTPILGSVIRDFLPWQHAMSYLEAILRVYNQY 240

Query: 241 GRRDNIYKARIKILVKAIGPEEFARQVEAEWQDIKDGPSTLTEEELQRVANYFTEPAYET 300
           GRRDN+YKARIKILVKAIGPEEFARQVE EW  IKDGPSTLTEEELQRVA +FT+PAYET
Sbjct: 241 GRRDNMYKARIKILVKAIGPEEFARQVEEEWAQIKDGPSTLTEEELQRVAKFFTDPAYET 300

Query: 301 LPATDAEYERLKAEDKGFANWIKRNVKEHKVPGYAAAILSLKKTGVPPGDITADQLDFVA 360
           LPA DAEYERLKAED+GFANWIKRNVK HK  GYAA +LSLKK GVPPGDITADQ++FVA
Sbjct: 301 LPAVDAEYERLKAEDRGFANWIKRNVKAHKKAGYAAVVLSLKKPGVPPGDITADQMNFVA 360

Query: 361 DLADRYSFSELRVTHEQNLVLADVKKSELYALWKEARAHGLATPNIGLLTDIICCPGGDF 420
           DLAD+YSF ELRVTHEQNLVLADVK+SELYALW+ A++HGLATPNIGLLTDIICCPGGDF
Sbjct: 361 DLADQYSFGELRVTHEQNLVLADVKQSELYALWQAAKSHGLATPNIGLLTDIICCPGGDF 420

Query: 421 CSLANAKSIPIAQAIAERFDNIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGA 480
           CSLANAKSIPIAQAIAE+F+NIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDG+
Sbjct: 421 CSLANAKSIPIAQAIAEKFENIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGS 480

Query: 481 EWYQVSLGGAQGNTSSIGKIIGPSFSAHQMPTVIDRLLQVYVKQRIEDERFIDTVRRIGV 540
           EWYQVSLGGAQGN SS+GKIIGPSFSA QMPTVIDRLLQVYV+QR E+ERFIDTVRRIGV
Sbjct: 481 EWYQVSLGGAQGNESSVGKIIGPSFSATQMPTVIDRLLQVYVQQRTEEERFIDTVRRIGV 540

Query: 541 TPFKDFVYASPIK-AGHVTGEDVCA 564
           TPFK+FVYA+PI+ A +V GED  A
Sbjct: 541 TPFKEFVYATPIRSAEYVAGEDANA 565


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,863,339
Number of extensions: 80862
Number of successful extensions: 196
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 474
Effective length of database: 1,193,720
Effective search space: 565823280
Effective search space used: 565823280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)