BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0005.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III C-methyltr...   348   3e-97
gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransfera...    97   2e-21

>gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  348 bits (893), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 182/247 (73%), Positives = 210/247 (85%), Gaps = 3/247 (1%)

Query: 18  SASSASATDAAPTA---GKVYLIGAGPGAADLITVRGARLLAQADVVLHDALVTEEMLEL 74
           +A+S S+   AP+    G V+L+G+GPGAADL+TVR ARLLAQA++VLHDALVT ++L L
Sbjct: 6   AATSHSSDSPAPSPEHPGMVWLVGSGPGAADLLTVRAARLLAQAEIVLHDALVTPDILAL 65

Query: 75  CPQAVKISVGKRSGQRSTAQQVINERLIECARQYRLVVRLKGGDPMLFGRADEELRALDS 134
           CPQAV +SVGKRSGQRSTAQ VIN++L+E A+QYR VVRLKGGDPMLFGRADEE+RAL+ 
Sbjct: 66  CPQAVLVSVGKRSGQRSTAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEMRALEE 125

Query: 135 QNIPYEIVPGITAALAAASSAQRPLTKRGIARSVSLFTSSTAPDEPSEFIMPNGDTLVQY 194
            +IPYEIVPGITAALAAAS+A+RPLT+RGIARSVSLFTSST  DEP E  MPNGDTLVQY
Sbjct: 126 HHIPYEIVPGITAALAAASAAKRPLTRRGIARSVSLFTSSTGVDEPDEVRMPNGDTLVQY 185

Query: 195 MGGREAAATAQRLLSLGYARTTPVVVVENCSRDNERILDLELGTLEQGLAQCSGPVLVMI 254
           MGGREA ATAQRLL+LG+A  TPVVVVENCSR ++ I  L+L  LE GL  CSGPVLVMI
Sbjct: 186 MGGREATATAQRLLALGHAPDTPVVVVENCSRPDQHIYHLQLAGLEAGLQACSGPVLVMI 245

Query: 255 GEALASR 261
           G ALA R
Sbjct: 246 GPALADR 252


>gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 124/236 (52%), Gaps = 18/236 (7%)

Query: 33  KVYLIGAGPGAADLITVRGARLLAQADVVLH-DALVTEEMLELC-PQAVKISVGKRSGQR 90
           KVY +GAGPGAADLIT+RGARLL Q  +VL+  +LV   +LE C P A  I       ++
Sbjct: 2   KVYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHPAAEIIDTAALDLEQ 61

Query: 91  STAQQV-INERLIECARQYRLVVRLKGGDPMLFGRADEELRALDSQNIPYEIVPGITAAL 149
             A  V   E+ I+       VVRL  GDP ++G   E++R LD+  I YE+VPG+++  
Sbjct: 62  QQACYVRAQEQGID-------VVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFT 114

Query: 150 AAASSAQRPLTKRGIARSVSLF----TSSTAPDEPS-EFIMPNGDTLVQYMGGREAAATA 204
           AAA++    LTK  +++SV L      +S  P+  S   +  +  T+  ++ G       
Sbjct: 115 AAAAAVSAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIV 174

Query: 205 QRLLSLGYARTTPVVVVENCSRDNERILDLELGTL--EQGLAQCSGPVLVMIGEAL 258
             LL L Y   TPV +V   +   +RI   +L  +  E    + +   ++++G AL
Sbjct: 175 TDLL-LHYPPATPVTLVYRATWPEQRIYQGQLDKVLEENKRGEWNLTTMMLVGAAL 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 692,542
Number of extensions: 26334
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)