BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0105.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312737|ref|YP_003776829.1| transcription regulator protein... 373 e-105 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 65 4e-12 gi|300311761|ref|YP_003775853.1| GntR family transcription regul... 62 5e-11 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 61 7e-11 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 57 2e-09 >gi|300312737|ref|YP_003776829.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 373 bits (958), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/234 (79%), Positives = 212/234 (90%) Query: 1 MEHTILADLSQIRKITHATLSQRVYEDVRELLLAGQVRPGQKLTLKSLSEALGTSQMPVR 60 M+ T++ADLS +RKI HATLS+RVY+D+ EL+ AGQVRPGQKLTLK L++ALGTS MPVR Sbjct: 1 MDPTLIADLSTMRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVR 60 Query: 61 EAIRQLSAEGALEILPNRAVRVPLMTKDKFRELLKIRLALEGLAVEHAAQNISAEGLQAV 120 EA+RQL+AEGALEILPNRA+RVPLMTK KFRELLKIRLALEGLA+EHAA++I A GL+ V Sbjct: 61 EAVRQLAAEGALEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQV 120 Query: 121 ADLHDTLCIEMHRKKPNVDLIIRLNKQLHFAAYEGSGMTTLVSLIESLWLQVGPVINLDL 180 A LHDTL +EM RK+PNVDL+IRLNKQLHFAAY+GSGM TLV LI LWLQVGPVINLDL Sbjct: 121 ARLHDTLSVEMKRKRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDL 180 Query: 181 RAGSRRLSEAPALVHHAALLKGLQDKSPEQARAGLSGDLLSAAQMILAGDGLPD 234 RAGSRRL+EAPALVHHA LL+GL+ SPE+ARAGL GDLLSAA+MILAGDGLPD Sbjct: 181 RAGSRRLAEAPALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 234 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 65.1 bits (157), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 12/196 (6%) Query: 19 TLSQRVYEDVRELLLAGQVRPGQKLTLKSLSEALGTSQMPVREAIRQLSAEGALEILPNR 78 TLS+ V+ ++ ++ G++ PG K++ L+ G S+ P+REAI +L + L +P+ Sbjct: 16 TLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHV 75 Query: 79 AVRVPLMTKDKFRELLKIRLALEGLAVEHAAQNISAEGLQAVADLHDTLCIEMHRKKPNV 138 RV +T + EL +IR +LEG+A AAQ +S L + + DT H K Sbjct: 76 GARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDT-----HEKDEAF 130 Query: 139 DLIIRLNKQ-----LHFAAYEGSGMTTLVSLIESLWLQVGPVINLDLRAGSRRLSEAPAL 193 +Q H+ + SG L ++ Q+ + + A R + A Sbjct: 131 QAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQ--AF 188 Query: 194 VHHAALLKGLQDKSPE 209 H +L L D E Sbjct: 189 AEHHRILDALADGDGE 204 >gi|300311761|ref|YP_003775853.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 61.6 bits (148), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 56/93 (60%) Query: 23 RVYEDVRELLLAGQVRPGQKLTLKSLSEALGTSQMPVREAIRQLSAEGALEILPNRAVRV 82 R+ E +R ++ G++ G L +++ +S +PVREA RQL AEG + LP R VRV Sbjct: 14 RIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVRV 73 Query: 83 PLMTKDKFRELLKIRLALEGLAVEHAAQNISAE 115 ++ + +E ++R +LE LA+ H+A+ AE Sbjct: 74 TMVDRATVKENAEMRGSLEILALRHSARKFGAE 106 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 61.2 bits (147), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 22/180 (12%) Query: 16 THATLSQRVYEDVRELLLAGQVRPGQKLTLKSLSEALGTSQMPVREAIRQLSAEGALEIL 75 T T ++ + E + EL+ ++ PGQ L SL+E G S+ P+REA+ QL++ G +E+ Sbjct: 3 TPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMR 62 Query: 76 PNRAVRVPLMTKDKFRELLKIRLALEGLA----------VEHAAQNISAEGLQAVADLHD 125 P R V + + E+ ++ E + EHA + + QA D +D Sbjct: 63 PRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDAND 122 Query: 126 TLCIEMHRKKPNVDLIIRLNKQLHFAAYEGSGMTTLVSLIESLWLQVGPVINLDLRAGSR 185 D LN+ H Y GS L +L ++ P L LR R Sbjct: 123 P------------DAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDR 170 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 26/221 (11%) Query: 12 IRKITHATLSQRVYEDVRELLLAGQVRPGQKL-TLKSLSEALGTSQMPVREAIRQLSAEG 70 I I L +++ + +R+L++ G+ G +L + + L+ LG S+ +REA+ L EG Sbjct: 3 IEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEG 62 Query: 71 ALEI--------LP--NRAVRVPLMTKDKFRELLKIRLALEGLAVEHAAQNISAEGLQAV 120 +E+ P R R+ L +++ EL++ R +EG AAQ+ S Q + Sbjct: 63 HIEVRMGSGIYVCPPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSK---QQI 119 Query: 121 ADLHDTLCIEMHRKKPNVDLIIRLNKQLHFAAYEGSGMTTLVSLIESLW-LQVGPVI--- 176 A + + + + + +D + ++ H E +G + LV L+ L+ ++GP+ Sbjct: 120 AAVEEAYALMISNAQAGID-PLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRL 178 Query: 177 --NLDLRAGSRRLSEAPALVHHAALLKGLQDKSPEQARAGL 215 + D G+R EA + HA +++ L+ ++PEQARA + Sbjct: 179 HSHFD---GTRVWQEA--IDEHALVMEALRQRNPEQARAAM 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 686,195 Number of extensions: 26454 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 8 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)