BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0103.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311513|ref|YP_003775605.1| beta-lactamase class C protein ...    59   9e-10

>gi|300311513|ref|YP_003775605.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 21/228 (9%)

Query: 26  AQNLAPAPVAPLAFAPLEPTLTSYLVQYKLPALAAAVVQDGRIIAAGAVGTRKVGSGIAV 85
           AQ  AP+P+  L  A ++  +   L  Y +P  + A+   GR++     G     +   V
Sbjct: 36  AQETAPSPLQGLE-ARVDAQMGRLLAAYPIPGASIAIAYQGRLVYQRGYGMAVTETQTPV 94

Query: 86  TVNDRFHIGSDTKAFTAT-----LAGIL---VDRGAMAWTTTLGD-AFPELAPKMDPDFR 136
           T   RF IGS +K+ TA        G L   ++R        L D A+P+ A  +D    
Sbjct: 95  TPQTRFRIGSISKSVTAMAMLKLFEGELPEALERRVFGPDGLLPDTAYPDFAQPLDRRAL 154

Query: 137 RITISQLLSHTSGIPADNAEFLELL-----AKSMFEEGNLDDLRYWTLQQWMSKPLPVQP 191
           +IT+  LL HT+G    + E L+ L        +    +  D+  + L+Q +    P   
Sbjct: 155 KITLRDLLQHTAGWGDSDYEPLDDLRHIAEVMKVKSPASAKDVIAYVLKQRLLDAAP--- 211

Query: 192 GQRGQHFAYSNLGYTIAGAMIERVARKSWEELINESIFDPMELKSAGL 239
              G  F Y N  Y + G +IE+ +   + + +   ++ P  +  A +
Sbjct: 212 ---GTEFFYDNFAYVVLGRIIEQRSGLPYAQAVQALVWHPAGVSDAAI 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,247,507
Number of extensions: 58079
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)