BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0102.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312735|ref|YP_003776827.1| DedA transmembrane protein [Her...   352   2e-98
gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protei...   227   8e-61

>gi|300312735|ref|YP_003776827.1| DedA transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  352 bits (902), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 180/211 (85%), Positives = 198/211 (93%)

Query: 16  MDFLLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFAETGLVVTPILPGDSLLFVTGA 75
           MD LLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIF ETGLVVTPILPGDSLLFVTGA
Sbjct: 1   MDILLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 60

Query: 76  IAATGAFDIHLMVLTLIVAAISGDSVNYQIGKAIGLKVFDNPNSRIFKREYLDKTHAFYE 135
           +AATGA+DI+LMVLTLIVAAI GDS NYQIGK +G+KVFD PNSRIFK+EYLDKTHAF+E
Sbjct: 61  LAATGAYDINLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLDKTHAFFE 120

Query: 136 RHGGKTVIIARFAPIVRTFAPFVAGVGAMTYTRFFAYNVIGGILWVASFGYAGYFFGNLP 195
           +HGGK +IIARFAPIVRTFAPFVAGVGAMTYTRFF YNV+GGI WVASF YAGYFFGN+P
Sbjct: 121 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYTRFFLYNVVGGIAWVASFAYAGYFFGNMP 180

Query: 196 VVKQNLSLLIVAIVVLSILPGVIGYLRQRMK 226
           +VK+NLSLLIVAIV+LSILPG+I Y+R + +
Sbjct: 181 IVKKNLSLLIVAIVILSILPGIIEYIRHKRR 211


>gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  227 bits (578), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 113/214 (52%), Positives = 154/214 (71%), Gaps = 2/214 (0%)

Query: 16  MDFLLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFAETGLVVTPILPGDSLLFVTGA 75
           MD+L  L+D +VH+D++L  L   YG  ++ +LFLI+F ETGLVV P LPGDSLLF+ G 
Sbjct: 1   MDYLQ-LLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGT 59

Query: 76  IAATGAFDIHLMVLTLIVAAISGDSVNYQIGKAIGLKVFDNPNSRIFKREYLDKTHAFYE 135
             ATGA DI L++  L+VAA++G+++NY IG  +G +V+ + N R    E L KTHAFYE
Sbjct: 60  FCATGAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTH-NYRWLNPEALRKTHAFYE 118

Query: 136 RHGGKTVIIARFAPIVRTFAPFVAGVGAMTYTRFFAYNVIGGILWVASFGYAGYFFGNLP 195
           +HGGKT++IARF PIVRTFAPF+AGV AM++ RF  +NV+G  LWV      GY FGN+P
Sbjct: 119 KHGGKTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIP 178

Query: 196 VVKQNLSLLIVAIVVLSILPGVIGYLRQRMKSLR 229
           VV+QNL+ L++  +V ++ P V+G L Q  + LR
Sbjct: 179 VVQQNLNTLVLIGIVAAVFPIVLGGLWQIWRKLR 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.148    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,106
Number of extensions: 24349
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 3
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)