BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0101.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   495   e-141
gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   300   1e-82

>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  495 bits (1275), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/356 (70%), Positives = 294/356 (82%), Gaps = 10/356 (2%)

Query: 11  GSLLVFLASFCLCLQAQEK-PHIVVLATGGTIAGANISSIRSPAFQAAVVPVDRMIAAVP 69
           G++++   +     QAQ+K P++VV+ TGGTIAGA  SS+ + A+Q+AVVPVD++IAAVP
Sbjct: 10  GAVMILSLACAFSAQAQDKKPNVVVIGTGGTIAGAGASSVNTAAYQSAVVPVDKIIAAVP 69

Query: 70  EIQKIAHVTGEQIFQVPSENFTDERLIKLGKRVSELLKKSNVDGIVITDTMEETAYFLNF 129
           EI KIA+V GEQIFQ+ SE+F DERLIKLGKRVSELLK+++VDGIVIT            
Sbjct: 70  EISKIANVRGEQIFQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGT--------- 120

Query: 130 DTMEETAYFLNLTLKSTKPVVLVGAMRASTQLGSDGSANFHDAIAVAASKEAIGKGTLVS 189
           DT+EETAYFLNL LKS KPVV+VG+MR  T LG+DG+ N +DA+ VA SKEA GKGTLV 
Sbjct: 121 DTIEETAYFLNLVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGTLVV 180

Query: 190 MNDEIYSARDVTMGNTLKLETLRSPYGPLGLIIEGKVMFYRQPTRPHTVASEFDIDRLST 249
           MNDEI+S RDVT  NT K+ET RSPYGPLG ++E K+ FYR P RPHT  +EFDID++S+
Sbjct: 181 MNDEIHSGRDVTKSNTFKVETFRSPYGPLGYVVENKLSFYRLPARPHTTQTEFDIDKISS 240

Query: 250 LPRVDIVYNYGNVSPVAYEALVNAGAKAIIHNGTGNGSVAEQIVPVLQEVRSKGLQVVRA 309
           LPRVDIVYNYGNVS  AY+A V AGAKAIIH+GTGNGSVAEQIVPVLQEVRSKG+QV+RA
Sbjct: 241 LPRVDIVYNYGNVSRTAYDAFVAAGAKAIIHDGTGNGSVAEQIVPVLQEVRSKGVQVIRA 300

Query: 310 TRTGSGVVIRNGEQNDDKFDWVVTDDQNPQKARILTALALTKTNDSKELQKILWKY 365
           +RTGSGVVIRNGEQ DDKFDWVVTDDQN QKARIL  LALTKTND KELQKI+WKY
Sbjct: 301 SRTGSGVVIRNGEQPDDKFDWVVTDDQNAQKARILAELALTKTNDPKELQKIMWKY 356


>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  300 bits (769), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/284 (53%), Positives = 200/284 (70%), Gaps = 10/284 (3%)

Query: 83  FQVPSENFTDERLIKLGKRVSELLKKSNVDGIVITDTMEETAYFLNFDTMEETAYFLNLT 142
            Q+ SEN  ++  +KLGKRV+ LL +S+VDGIVIT            DT+EETAYFL+L 
Sbjct: 1   MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGT---------DTIEETAYFLDLV 51

Query: 143 LKSTKPVVLVGAMRASTQLGSDGSANFHDAIAVAASKEAIGKGTLVSMNDEIYSARDVTM 202
           +KS KPVV+VGAMR ST + +DG  N ++A+ +A SKEAIGKG LV++ND+I + R+VT 
Sbjct: 52  VKSKKPVVIVGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTK 111

Query: 203 GNTLKLETLRSP-YGPLGLIIEGKVMFYRQPTRPHTVASEFDIDRLSTLPRVDIVYNYGN 261
            NT  L+T ++P  G LG I   K  FYRQ TR +TV + FDI  L  LP+VDIVY Y N
Sbjct: 112 TNTSTLDTFKTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYAN 171

Query: 262 VSPVAYEALVNAGAKAIIHNGTGNGSVAEQIVPVLQEVRSKGLQVVRATRTGSGVVIRNG 321
           ++P+A  A V AGA+ IIH G G+GS+   +VP L E R KG+ +VR++R G G+V RNG
Sbjct: 172 MNPIALNAFVAAGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNG 231

Query: 322 EQNDDKFDWVVTDDQNPQKARILTALALTKTNDSKELQKILWKY 365
           E +DDK D+VV+D  N QKARIL  LALTKT D+KE+QK+ W+Y
Sbjct: 232 EADDDKLDFVVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,114,758
Number of extensions: 47038
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)