BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0100.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   430   e-122
gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   207   6e-55

>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  430 bits (1105), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/249 (89%), Positives = 235/249 (94%)

Query: 1   MQHLKLKQLGGVLLLSAAMSLSAQAQEKKANVVVIGTGGTIAGAGASSVNTAAYQSAVVP 60
           MQ  + K++G V++LS A + SAQAQ+KK NVVVIGTGGTIAGAGASSVNTAAYQSAVVP
Sbjct: 1   MQQAQFKKIGAVMILSLACAFSAQAQDKKPNVVVIGTGGTIAGAGASSVNTAAYQSAVVP 60

Query: 61  VDKIIAAVPEISKIANVRGEQIFQIGSESFNDERLLKLGKRVSELLKQNDVDGIVITHGT 120
           VDKIIAAVPEISKIANVRGEQIFQIGSESFNDERL+KLGKRVSELLKQNDVDGIVITHGT
Sbjct: 61  VDKIIAAVPEISKIANVRGEQIFQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGT 120

Query: 121 DTIEETAYFLNLTLKSTKPVVVVGSMRPGTALGADGALNLYDAVLVASSKDAAGKGTLVV 180
           DTIEETAYFLNL LKS KPVVVVGSMRPGTALGADGALNLYDAVLVA SK+AAGKGTLVV
Sbjct: 121 DTIEETAYFLNLVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGTLVV 180

Query: 181 MNDEIHSGRDVTKTNSFKVETFRSPYGPLGYVVEGKLMFYRLPARPHTTQTEFDIDKINS 240
           MNDEIHSGRDVTK+N+FKVETFRSPYGPLGYVVE KL FYRLPARPHTTQTEFDIDKI+S
Sbjct: 181 MNDEIHSGRDVTKSNTFKVETFRSPYGPLGYVVENKLSFYRLPARPHTTQTEFDIDKISS 240

Query: 241 LPRVDIAYN 249
           LPRVDI YN
Sbjct: 241 LPRVDIVYN 249


>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  207 bits (528), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 130/167 (77%), Gaps = 1/167 (0%)

Query: 83  FQIGSESFNDERLLKLGKRVSELLKQNDVDGIVITHGTDTIEETAYFLNLTLKSTKPVVV 142
            QI SE+ N++  LKLGKRV+ LL Q+DVDGIVITHGTDTIEETAYFL+L +KS KPVV+
Sbjct: 1   MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60

Query: 143 VGSMRPGTALGADGALNLYDAVLVASSKDAAGKGTLVVMNDEIHSGRDVTKTNSFKVETF 202
           VG+MRP TA+ ADG +NLY+AVL+A SK+A GKG LV +ND+I++GR+VTKTN+  ++TF
Sbjct: 61  VGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTF 120

Query: 203 RSP-YGPLGYVVEGKLMFYRLPARPHTTQTEFDIDKINSLPRVDIAY 248
           ++P  G LGY+   K  FYR   R +T  T FDI  ++ LP+VDI Y
Sbjct: 121 KTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVY 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 643,015
Number of extensions: 24457
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)