BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0096.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310780|ref|YP_003774872.1| hypothetical protein Hsero_1448...   101   2e-23

>gi|300310780|ref|YP_003774872.1| hypothetical protein Hsero_1448
           [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score =  101 bits (252), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 94/180 (52%), Gaps = 58/180 (32%)

Query: 7   DNSIPLLTEVI-----------------APPAAPE--NQAPQALQWEDTQPQQPHPQPDY 47
           DNSIPLLTEVI                 APPA P   +  P A  ++ T P  P      
Sbjct: 5   DNSIPLLTEVIPLAPAAPAHTPARAPDYAPPARPGAFHTQPAATSYQATPPGAPI----- 59

Query: 48  QQHFQPEPIQAFQPQYQPTYDAAPLPVSVSTPLPPQPFAPEPSAEQLRQLRQDIQENVMQ 107
                                 APLPV+             P+AEQ RQ  Q+I+ENV+Q
Sbjct: 60  ---------------------VAPLPVT-------------PAAEQYRQWEQEIRENVLQ 85

Query: 108 TLLGQIDNVLHQHLQDHLAVILDNMADILKTRVRASLEQALAETVTQALAEEMAKFENAK 167
           +LL Q+D VL Q LQD +A++LDN++ +L  R++ SL +ALAETVT+A+AEEMA+F + K
Sbjct: 86  SLLEQVDTVLQQQLQDQMALVLDNLSTVLTQRIKDSLHEALAETVTRAVAEEMARFASTK 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 314,268
Number of extensions: 8867
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)