BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0094.p
         (702 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillu...  1197   0.0  

>gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillum
           seropedicae SmR1]
          Length = 691

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/694 (81%), Positives = 628/694 (90%), Gaps = 4/694 (0%)

Query: 9   TTITPGNNPLLDFSGLARFDAIKPEHVTPAVDALLAKASTLVTALEAPMAQVTWANFVEP 68
           TT     NPLLDFSG A+FDAI+PEHVTPA+D LLA AS LVT LEAPMA+VTW NFV+P
Sbjct: 2   TTTDIAANPLLDFSGYAQFDAIQPEHVTPALDKLLADASRLVTELEAPMAEVTWDNFVKP 61

Query: 69  LENATEQLGRAWSIVGHLNSVMDTPELRAAYNENQPRLVEFWTALGQNLALFEKYKAVQT 128
           LE+ATE+LGRAWS+VGHLNSVMDTP LRA YNENQPRLVEFWT+LGQNLALFEKYKA+Q 
Sbjct: 62  LESATEKLGRAWSVVGHLNSVMDTPALRATYNENQPRLVEFWTSLGQNLALFEKYKALQA 121

Query: 129 GPEYASLSGARKKVIDNAVRDFRLSGAELPDDQKERFAEIQEKSAALTTRFSENILDATN 188
            P +ASLS AR+KV+DNAVRDFRLSGAEL +D+KERFAEIQEK A LTTRFSEN+LDATN
Sbjct: 122 SPAFASLSAARRKVVDNAVRDFRLSGAELAEDKKERFAEIQEKQAMLTTRFSENVLDATN 181

Query: 189 DFGLFVENETDLAGLPDDVKQAARAAAEKDGTPGFKFTLHFPSYFPILQYAHSRSLREQI 248
           DF LFVE+E +L+GLP DVKQAARAAAEKDG PG+KFTLHFPSYFP+LQYA +R+LRE+I
Sbjct: 182 DFALFVEDEAELSGLPADVKQAARAAAEKDGKPGYKFTLHFPSYFPVLQYADNRALREKI 241

Query: 249 YRANATKASELGATPEWDNTANMQEILQLRHEEAVMLGFKNFAELSLVPKMAQSPQEVIG 308
           YRANATKASELGA PEWDN+AN+ +ILQLR EEA +LG+ NFAE+SLV KMA+SP EVI 
Sbjct: 242 YRANATKASELGAKPEWDNSANIDQILQLRKEEAQLLGYANFAEVSLVAKMAKSPSEVIA 301

Query: 309 FLEDLGRRARSYGEKDWEELRAFAKEELGIDTIEAWDMTYAAEKLREQRYAFSEQEVKQY 368
           FLEDLG+RAR +G+KD+EEL+AFA+E+LG+D ++AWD TYA+EKLREQRYAFSEQEVKQY
Sbjct: 302 FLEDLGQRARPFGQKDYEELKAFAREKLGLDELKAWDSTYASEKLREQRYAFSEQEVKQY 361

Query: 369 FPEPKVIEGLFQVIQRLFNVDIKPDSAPVWHPDVKFFRIERDGKLVGQFYLDLYARSGKR 428
           FPEPKV+ GLFQV Q+LF V IKPDSAPVWH DVKFFRIERDG+LVGQFYLDLYARSGKR
Sbjct: 362 FPEPKVVGGLFQVAQQLFGVQIKPDSAPVWHKDVKFFRIERDGQLVGQFYLDLYARSGKR 421

Query: 429 GGAWMDDARARRMTANGVQTPIAYLVCNFTEPMTVDGREGKERKPALFTHDEVITLFHES 488
           GGAWMDDARARR+TA GVQTPIAYLVCNFTEP  VDG      KPALFTHDEVITLFHE 
Sbjct: 422 GGAWMDDARARRLTAQGVQTPIAYLVCNFTEPAVVDGVA----KPALFTHDEVITLFHEF 477

Query: 489 GHGLHHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQHMTAHADTGAPLPRE 548
           GHGLHHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQ +TAHADTG PLPR 
Sbjct: 478 GHGLHHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQQLTAHADTGEPLPRA 537

Query: 549 LFDKMTAAKNFQSGLQMLRQVEFSLFDMHIHYDYDASGKDSVQSVLNAVRDKFAVIRPPE 608
           L+DKM AAKNFQSGLQMLRQVEFSLFDM IH++Y+  G  +VQ +L++VRD+ AVIRPPE
Sbjct: 538 LYDKMIAAKNFQSGLQMLRQVEFSLFDMLIHHEYEVGGNQTVQQLLDSVRDRIAVIRPPE 597

Query: 609 FNRFQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAAKGDNVVSIETGLRFQKEI 668
           FNRFQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAA   NV+S+ETG RFQ+EI
Sbjct: 598 FNRFQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAAGSGNVISLETGRRFQQEI 657

Query: 669 LAVGGSRPAIESFKAFRGREPSIDALLRHSGMAA 702
           LAVGGSRPAIESFKAFRGREPSIDALLRHSGMAA
Sbjct: 658 LAVGGSRPAIESFKAFRGREPSIDALLRHSGMAA 691


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,133,621
Number of extensions: 88912
Number of successful extensions: 257
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 610
Effective length of database: 1,184,250
Effective search space: 722392500
Effective search space used: 722392500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)