BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0089.p (214 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/sign... 171 4e-44 gi|300309409|ref|YP_003773501.1| glutamine ABC transporter perip... 70 2e-13 gi|300311601|ref|YP_003775693.1| glutamine ABC transporter perip... 68 5e-13 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 64 8e-12 gi|300313886|ref|YP_003777978.1| amino acid ABC transporter peri... 61 7e-11 >gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 171 bits (433), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 83/138 (60%), Positives = 104/138 (75%) Query: 19 ILASPGAAGAQDLLEVVKARGVLRVALEGTYPPFNFKDRKTGELTGFDVEFARALAGRLG 78 +LAS + A DLL+ VK+ G L+VALEG YPPFNFKD KTGELTGF+V+ A+ LA +LG Sbjct: 17 LLASSLSVSAADLLQSVKSSGTLKVALEGNYPPFNFKDPKTGELTGFEVDVAKLLAAKLG 76 Query: 79 LRADFVATEWVGILAGLQVGKYDAIISQVTMTSRREAEFDFSIPYTYSSAQLIQRLDDKN 138 ++ F TEW GILAGL GKYD II+QV +T R+ FDFS PYT SSAQLI R D+K Sbjct: 77 VKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQLIVRKDEKR 136 Query: 139 DYRSIAGLKGKAVGVGQG 156 +++S+ LKGK +G+GQG Sbjct: 137 EFKSLEDLKGKKLGLGQG 154 >gi|300309409|ref|YP_003773501.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 47 GTYPPFNFKDRKTGELTGFDVEFARALAGRLGLRADFVATEWVGILAGLQVGKYDAIISQ 106 GTY PF F+ K EL GFD++ +A++ + V+T W GI A L G D IIS Sbjct: 36 GTYRPFEFETPKK-ELVGFDIDLIKAISQASNFKIQLVSTPWEGIFATLGQGDRDIIISG 94 Query: 107 VTMTSRREAEFDFSIPYTYSSAQLIQRLDDKNDYRSIAGLKGKAVGV 153 +T+T +R DFS+PY + +I D K S++ LK V V Sbjct: 95 ITITDKRAQMVDFSLPYFPAEQVIITNADAK--ITSLSDLKKTQVAV 139 >gi|300311601|ref|YP_003775693.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 251 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 40 VLRVALEGTYPPFNFKDRKTGELTGFDVEFARALAGRLGLRADFVATEWVGILAGLQVGK 99 V+RV + T+PP F K G+ TGFDVE ALA +G + ++ ++ G++ GL + Sbjct: 31 VIRVGTDATFPPMEFV--KDGKRTGFDVELIEALAKTMGKKVQWIDIDFKGLIPGLVSNR 88 Query: 100 YDAIISQVTMTSRREAEFDFSIPYTYSSAQLIQRLDDKNDYRSIAGL-KGKAVGVGQGXK 158 +D S + MT R +FS PY ++ R DD N + L KGK V V G K Sbjct: 89 FDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDD-NSIKVPEDLNKGKRVSVQVGTK 147 Query: 159 AM 160 ++ Sbjct: 148 SV 149 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 64.3 bits (155), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 30 DLLEVVKARGVLRVALEGTYPPFNFKDRKTGELTGFDVEFARALAGRLGLRADFVATEWV 89 D L+ + A LRVA++ PP++ KD K L G DVE A+ +A GL + V T Sbjct: 29 DQLDTILAAKKLRVAIDLAVPPYSMKDDKL-RLIGSDVETAQRMAKDFGLELEVVPTTLT 87 Query: 90 GILAGLQVGKYDAIISQVTMTSRREAEFDFSIPY 123 + LQ K D +IS ++T R DFS+PY Sbjct: 88 NRVPYLQTNKADIVISAFSITPERAKVIDFSVPY 121 >gi|300313886|ref|YP_003777978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 61.2 bits (147), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 19 ILASPGAAGAQDLLEVVKARGVLRVALEGTYPPFNFKDRKTGELTGFDVEFARALAGRLG 78 +L A D L+ +K G +R+A + P F + D K +L G DVE AR LA LG Sbjct: 18 VLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKL-QLAGSDVEAARLLAQDLG 76 Query: 79 LRADFVATEWVGILAGLQVGKYDAIISQVTMTSRREAEFDFSIPYTYSSAQLIQRLDDKN 138 ++ D + + LQ + D ++ +++T R DFS PY S LI Sbjct: 77 VQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVIS--LIIGAPKSM 134 Query: 139 DYRSIAGLKGKAVGV 153 + A L GK +GV Sbjct: 135 VIKDYADLNGKRIGV 149 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 600,783 Number of extensions: 19849 Number of successful extensions: 81 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 13 Length of query: 214 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 133 Effective length of database: 1,236,335 Effective search space: 164432555 Effective search space used: 164432555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)