BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0088.p
         (110 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm...   105   9e-25
gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm...    79   1e-16
gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme...    72   1e-14
gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm...    70   3e-14
gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm...    70   4e-14

>gi|300311471|ref|YP_003775563.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  105 bits (261), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 69/91 (75%)

Query: 18  ANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMRGAMEGV 77
           A +YVS MR TP L+Q F+VY+GL   G+E   +  G L L+ NA AYLSE++RGA+ GV
Sbjct: 56  AAIYVSMMRGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGV 115

Query: 78  SAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           + GQW+A +S+GLT FQT+ +I++PQA+R+A
Sbjct: 116 TRGQWNAAFSVGLTYFQTLRYIIVPQAVRIA 146


>gi|300310828|ref|YP_003774920.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 78.6 bits (192), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 65/108 (60%)

Query: 1   MLVTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTA 60
            +V  +R   +  L  ++ VY+  ++ TP LI  FL ++GL   G +LP +V  T+ +T 
Sbjct: 36  FIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTI 95

Query: 61  NAGAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
            + AYL E  RG +E V   QW A  +L +TR+Q + ++++PQA+R++
Sbjct: 96  YSSAYLGEIWRGCIEAVPVPQWEASTALAMTRWQQLRYVILPQAVRIS 143


>gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 71.6 bits (174), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%)

Query: 13  VLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMRG 72
           V+  +  +Y++ +R TP L+Q FL +FGL   GV LP  V G L L   +GAY+SE +RG
Sbjct: 51  VIYGLCTIYLTLVRGTPLLVQLFLWFFGLPHVGVILPAYVCGILGLGIYSGAYVSEIVRG 110

Query: 73  AMEGVSAGQWSAGYSLGLTRFQTICHIVMPQA 104
           A++ +  GQ  A  SLGL     +  +++PQA
Sbjct: 111 AIQSIERGQMEAARSLGLPYRMAMRRVILPQA 142


>gi|300313166|ref|YP_003777258.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score = 70.5 bits (171), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%)

Query: 21  YVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMRGAMEGVSAG 80
           YV  +R+TP L+Q FLV+FGL + G +L       + LT N GAY +E MR  +  +  G
Sbjct: 60  YVEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPG 119

Query: 81  QWSAGYSLGLTRFQTICHIVMPQALR 106
           Q  A   LG++RF    H+V+  A+ 
Sbjct: 120 QIEAAECLGMSRFHVYWHVVLLPAVE 145


>gi|300310827|ref|YP_003774919.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score = 69.7 bits (169), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

Query: 8   HERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLS 67
           H   P   AV + YV  +RSTP L+Q F+++FGL + GV++   +   + +T N GAY +
Sbjct: 48  HGSKPARLAVTS-YVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYST 106

Query: 68  ETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALR 106
           E +R  M  +   Q  A  +L +TR+Q I H+V+  AL 
Sbjct: 107 EIVRAGMMAIHPSQIEAAQALAMTRWQVIRHVVLTPALE 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 335,029
Number of extensions: 12767
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 16
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 16
Length of query: 110
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 37
Effective length of database: 1,274,215
Effective search space: 47145955
Effective search space used: 47145955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 124 (52.4 bits)