BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0079.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312641|ref|YP_003776733.1| dienelactone hydrolase [Herbasp...   342   2e-95

>gi|300312641|ref|YP_003776733.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  342 bits (877), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/259 (65%), Positives = 208/259 (80%), Gaps = 5/259 (1%)

Query: 1   MSHHFDPAPIAAKFGIPAADLGIELISHVLDGVEYENVLLFNNKNTVPVAGVISIPNYFG 60
           MS  ++ A IA K GIPA DLGIE I+H  DG+ YE+VLL+N K   PV+GV+++PNYFG
Sbjct: 1   MSTPWNTAAIADKLGIPATDLGIETIAHSADGIAYESVLLYN-KAQPPVSGVVTVPNYFG 59

Query: 61  ISQKALEVTATIIGLGLHQAILVGDVYGKTVRPTTPDEGVAAIVPLKKERAELRKRMNAV 120
           + Q+ALE+ AT IG G   AILV DV+GKT+RP  PDE +AAI+PLKK+RAELRKRM+ V
Sbjct: 60  LRQQALEIAATTIGAG--HAILVADVFGKTLRPANPDEALAAIIPLKKDRAELRKRMHGV 117

Query: 121 LDAFKGQDKVKLNG-KLGASGFCFGGTAALELARSGAALQAFVSVHGALDTPNPKDAENI 179
           L   + Q  VKL+  +LGA GFCFGGTAALELAR GA ++  VS+HGALDTP P  ++ +
Sbjct: 118 LKVLREQSFVKLDAARLGACGFCFGGTAALELARDGADVRGTVSLHGALDTPAPAQSK-V 176

Query: 180 KGAVLVLHGVQDPSVPRDQVNAFIDEVSAANLDWQLVNYGQAGHSFTDPDAKNPGFFYHQ 239
           KGAVLVLHGVQDPSVPR+QVN FIDE+SA ++DWQLVNYGQA HSFTDPDA +PGFFYH+
Sbjct: 177 KGAVLVLHGVQDPSVPREQVNGFIDEMSALHIDWQLVNYGQAAHSFTDPDANSPGFFYHR 236

Query: 240 KTAERASVALKNFFAEKLA 258
           +TA+RA+VAL+ FF E LA
Sbjct: 237 QTAQRAAVALQAFFGEVLA 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 866,773
Number of extensions: 37990
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)