BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0077.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease ... 533 e-153 gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra... 101 7e-23 gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ... 99 4e-22 gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease ... 95 5e-21 gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 88 7e-19 >gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 533 bits (1374), Expect = e-153, Method: Compositional matrix adjust. Identities = 268/289 (92%), Positives = 282/289 (97%) Query: 1 VLGMLFMAPAVLLLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYSYLLGDSLAQLSL 60 VLGMLFMAPAV+LLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDN++YL GDSLAQLSL Sbjct: 11 VLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYLAGDSLAQLSL 70 Query: 61 FNTLFYTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIVPTALSALAFWWMYDS 120 FNT+FYT++ASILKF+LGLWLAILLNKN+PLK+FFRAIVLLPWIVPTALSALAFWW+YD+ Sbjct: 71 FNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDA 130 Query: 121 QFSVISWALVKMGLIDHYIDFLGEPWLARISTVVANVWRGIPFVAISLLAGLQTISPSLY 180 QFSVISWAL KMGLID YIDFLG+PW AR STV ANVWRGIPFVAISLLAGLQTISPSLY Sbjct: 131 QFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLY 190 Query: 181 EAAAIDGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMA 240 EAAAIDGA PWQQFR+VTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMA Sbjct: 191 EAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMA 250 Query: 241 TLSFQRAIPGGSLGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 289 TLSFQRAIPGG+LGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK Sbjct: 251 TLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 >gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 101 bits (252), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 133/286 (46%), Gaps = 23/286 (8%) Query: 2 LGMLFMAPAVLLLVVFLTYPLGLGIWLG-FTDTKIGGEGSFIGLDNYSYLLGDSLAQLSL 60 L L +AP +++ ++F +P ++ GG F+ DN+ L GD S Sbjct: 12 LPYLLVAPQIIITLLFFFWPAVQALYQSMLLQDAFGGYSEFVWFDNFKTLFGDPTYLESF 71 Query: 61 FNTLFYTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIV-PTALSALAFWWMYD 119 T ++ + L L LA+ ++ S ++ ++ P+ V P + L WM+ Sbjct: 72 RTTAIFSALVAFFGLALSLLLAVFADRVRRGASIYKTFLIWPYAVSPVVVGVL---WMFL 128 Query: 120 SQFSVISWALVKMGLIDHYIDFLGEPW-------LARISTVVANVWRGIPFVAISLLAGL 172 S +G++ H + +LG PW A I V+A +W+ I + + LAGL Sbjct: 129 LSPS--------LGILSHVLSWLGLPWDYMINGTHAMILIVIAAIWKQISYNFLFFLAGL 180 Query: 173 QTISPSLYEAAAIDGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTD-FQLIYVLTRGG 231 Q+I SL EAAAIDGA P ++F + PL++P + +V++ F D F ++ T GG Sbjct: 181 QSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFVVNVVYAFFDTFVIVDATTHGG 240 Query: 232 PLNATHLMATLSFQRAIPGGSLGEGAALATYMIPF--LLAAIMFSY 275 P T ++ F GG LG AA + ++ LL + F Y Sbjct: 241 PGKDTEILVYKVFSDGFKGGDLGGSAAQSVVLMALVILLTVVQFKY 286 >gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 99.0 bits (245), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 7/269 (2%) Query: 6 FMAPAVLLLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYSYLLGDSLAQLSLFNTLF 65 F+APA ++ +V++ YP+ I+L F E F+GL NY L +L N + Sbjct: 41 FLAPACVMTLVYVLYPILYTIYLSFFSWDGMTEPRFVGLANYVELFHAPTFYTALKNNVL 100 Query: 66 YTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIVPTALSALAFWWMYDSQFSVI 125 + + +L +GL +A+ LN+ + +++ P+++ + L + W YD F ++ Sbjct: 101 WLLM-FLLAPPMGLAIALYLNQKVIGMRVVKSLFFAPFVLSGVVVGLMYSWFYDPSFGLL 159 Query: 126 SWALVKMGLIDHYIDFLGEPWLARISTVVANVWRGIPFVAISLLAGLQTISPSLYEAAAI 185 S L + LG+ A + A +W + I L GL ++ EAA + Sbjct: 160 SL------LFGQGVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAARM 213 Query: 186 DGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMATLSFQ 245 +GAK W RYV LP L + S++ F LI V+T GGP ++ ++A ++ Sbjct: 214 EGAKGWTMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESSTVLAYYAYD 273 Query: 246 RAIPGGSLGEGAALATYMIPFLLAAIMFS 274 +AI G AA+A + +L I++ Sbjct: 274 QAIKYYRQGYSAAVAVTLFAIMLVYIVYQ 302 >gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 95.1 bits (235), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 3/240 (1%) Query: 1 VLGMLFMAPAVLLLVVFLTYPLGLGIWLGFTDTKIGGEGS-FIGLDNYSYLLGDSLAQLS 59 VL L ++PA++LL+ F YP +W F T G S F+GL+NY + D + + Sbjct: 8 VLPWLLLSPAMVLLIAFTHYPALATLWHSFFSTPKGVRPSVFVGLENYRLMADDPVFWQA 67 Query: 60 LFNTLFYTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIVPTALSALAFWWMYD 119 L N L++ + L L + +A+ +N+ L + R P ++P A + + Y Sbjct: 68 LCNNLWFALGTIPLAIALAILMALWVNEKLAGRGVLRLAYFTPTVLPMIAVANIWLFFYT 127 Query: 120 SQFSVISWALVKMGLIDHYIDFLGEPWLARISTVVANVWRGIPFVAISLLAGLQTISPSL 179 Q+ ++ +GL H ++LG P + +V VW+ F I LA LQ ISP L Sbjct: 128 PQYGLLEQITGALGLPSH--NWLGNPQTVLGALMVVAVWKEAGFFMIFYLAALQQISPVL 185 Query: 180 YEAAAIDGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLM 239 EAAA++GA WQ F V PLL P V+ +++ F I V+T+GGP NA+ L+ Sbjct: 186 AEAAALEGASRWQYFWRVQFPLLMPTTLFVLINALINAFRLVDHIVVMTKGGPDNASSLL 245 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 88.2 bits (217), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 7/235 (2%) Query: 5 LFMAPAVLLLVVFLTYPLGLGIWLGFTDTKI--GGEGSFIGLDNYSYLLGDSLAQLSLFN 62 L P+VL+L+ ++ PL + I+ + + F+GL+NY++LL D S+ N Sbjct: 42 LMQTPSVLILLAWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIGN 101 Query: 63 TLFYTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIVPTALSALAFWWM-YDSQ 121 T + + + G LA+L ++ + R +V+ P+ V ++AL + M Sbjct: 102 TALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPV 161 Query: 122 FSVISWALVKMGLIDHYIDFLGEPWLARISTVVANVWRGIPFVAISLLAGLQTISPSLYE 181 + ++++ + +GL ID+L E +S ++ W+ IPF + LL LQ++ E Sbjct: 162 YGILAYVMRHLGL--EPIDWLAE--YPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKE 217 Query: 182 AAAIDGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNAT 236 AA +DGA P + F Y+ LP L I VV+ +F + F I+ T GGP AT Sbjct: 218 AAQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTAT 272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.144 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 978,636 Number of extensions: 42525 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 248 Number of HSP's successfully gapped: 11 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)