BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0076.p
         (445 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312635|ref|YP_003776727.1| sugar ABC transporter periplasm...   791   0.0  

>gi|300312635|ref|YP_003776727.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 443

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/445 (85%), Positives = 412/445 (92%), Gaps = 2/445 (0%)

Query: 1   MTKLTRRNFLAASASVAAASTVATTNAFAAPAAPAATGAGLKFDIEKGATLRVLRWKRFV 60
           M+KLTRR FL  SA+ AAA+ +      A P A  A    +K+ IE+GATLRVLRWKRFV
Sbjct: 1   MSKLTRREFLVTSAAAAAATGMGANAFAAGPGAAGADS--IKYPIEQGATLRVLRWKRFV 58

Query: 61  QGDEDLWNANVKKFTEKTGVAVRTDSEGWEDLRPKAAVAANVGSGPDIVMSWFDDPQQYP 120
           QGDEDLWNAN+KKFTE TGVAVRTDSEGWED+RPK+AVAANVGSGPDIV+ WFDDPQQYP
Sbjct: 59  QGDEDLWNANIKKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYP 118

Query: 121 TKLIDLTDLATSLGSRLGGWYDVCRKYGTKDGKWIALPVGVVGNALVYRESQLKAAGFDA 180
           TKL+D+TDLA SLG R GGWYDVCRKYGTKDGKWIALP+GV+GNALVYRESQ+KAAGFDA
Sbjct: 119 TKLVDMTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDA 178

Query: 181 VPKDTAGFLKMCQALKAKNTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKKGAVAINSP 240
           +PKDTAGFLK+CQALKAK+TPVGFALGKAVGDANNWAHWLLWSHGGKLVDK G VAINSP
Sbjct: 179 IPKDTAGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKSGKVAINSP 238

Query: 241 ETRAALEYAKQLYATFIPGTLSWQDPSNNKAYLDGQISMTANGISVYYAAKNSTDPKLQE 300
           ETRAALEYAKQLYATF+PGTLSWQDPSNNKAYLDGQISMTANGISVYYAAKNS DPKLQE
Sbjct: 239 ETRAALEYAKQLYATFVPGTLSWQDPSNNKAYLDGQISMTANGISVYYAAKNSPDPKLQE 298

Query: 301 MAKDTQHAHFPVGPAGKPTELMQITQMMIFKHTKFPNAAKAFVQFMFEPEQYNPWMEASI 360
           + KDT HAHFP+GP GKP+ELMQITQMM+FKHTK+PNAAKAFVQFMFEP+QYNPWM+ASI
Sbjct: 299 IGKDTLHAHFPIGPVGKPSELMQITQMMVFKHTKYPNAAKAFVQFMFEPDQYNPWMKASI 358

Query: 361 GYVSQSLKAYEKNAIWTSDPKATVYRDSAALMIDHGHEGPLGQASAACMADYVVVDMVAE 420
           GYVSQSLKAYEKN IWT DPKATVYRDSA+LM+DHGHEGPLGQASAACMADYVVVDMVAE
Sbjct: 359 GYVSQSLKAYEKNPIWTEDPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAE 418

Query: 421 AASGSKTVQQAIDRAADRAKRFYKA 445
           AASG+KTVQQAIDRAADRAKR+YKA
Sbjct: 419 AASGAKTVQQAIDRAADRAKRYYKA 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,329,360
Number of extensions: 54476
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,203,190
Effective search space: 429538830
Effective search space used: 429538830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)