BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0075.p (317 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 556 e-160 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 312 2e-86 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 296 1e-81 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 287 7e-79 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 278 3e-76 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 556 bits (1434), Expect = e-160, Method: Compositional matrix adjust. Identities = 271/315 (86%), Positives = 289/315 (91%), Gaps = 1/315 (0%) Query: 1 LRMLAGLEEITEGEISIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKK 60 LRMLAGLEEIT GEI IGGTVVNNVQPKDRDIAMVFQNYALYPHMTV DNMAFSL LAKK Sbjct: 46 LRMLAGLEEITGGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKK 105 Query: 61 DKSFIQQQVKKAAEILGLTTLLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD 120 DK+F+ ++VKKAA+ILGL LL+RYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD Sbjct: 106 DKAFVDERVKKAADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD 165 Query: 121 AKLRVQMRTEIKELHQRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRP 180 AKLRVQMRTEIKELHQRLKTTS+YVTHDQIEAMTMADQIVVMRDGLVEQRGRPL+LYD P Sbjct: 166 AKLRVQMRTEIKELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYP 225 Query: 181 ANIFVAGFIGSPAMNFIPATLRRNADKAEVEFADGTRLPAPYAHRGLDGVDGQRVVYGVR 240 AN+FVAGFIGSPAMNFIPATLRRNA AEVEFADGTR+PAPY L G DGQ+V YGVR Sbjct: 226 ANLFVAGFIGSPAMNFIPATLRRNATGAEVEFADGTRVPAPYGA-ALQGNDGQKVTYGVR 284 Query: 241 PEHLSIGPAGSGMNTKVVVVEPTGADTEVYARFSDTSLTSIFRERHDFSAGDTITLVPEH 300 PEHLSIG AG G+ TKV+VVEPTGADTEV++RF DTSLTSIFRERHDF AGD I LVP+H Sbjct: 285 PEHLSIGAAGQGIATKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDH 344 Query: 301 GSTHLFDADSGKTLA 315 THLFDA+SGK+LA Sbjct: 345 SRTHLFDAESGKSLA 359 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 312 bits (799), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 171/317 (53%), Positives = 208/317 (65%), Gaps = 14/317 (4%) Query: 1 LRMLAGLEEITEGEISIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKK 60 LRM+AGLEEI+ G+I IG VVN+++PK+RDIAMVFQNYALYPHMTV NMA+ L + Sbjct: 50 LRMVAGLEEISSGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGL 109 Query: 61 DKSFIQQQVKKAAEILGLTTLLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD 120 KS I +V++AA IL L LLER PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLD Sbjct: 110 SKSEIDARVQRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLD 169 Query: 121 AKLRVQMRTEIKELHQRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRP 180 AKLRVQMR EI++LH L+TTS+YVTHDQ+EAMT+ +++VM G+ EQ G P E+Y RP Sbjct: 170 AKLRVQMRLEIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARP 229 Query: 181 ANIFVAGFIGSPAMNFIPATLRRNADKAEVEFADGT-----RLPAPYAHRGLDGVDGQRV 235 A FVA FIGSP MN + L +AD A E + G RLP P L G GQ Sbjct: 230 ATTFVASFIGSPPMNLLQGKL--SADGASFEVSKGNASDILRLPQP-----LTGAAGQER 282 Query: 236 VYGVRPEHL--SIGPAGSGMNTKVVVVEPTGADTEVYARFSDTSLTSIFRERHDFSAGDT 293 + GVRPEHL + + + ++ +V +VE GA+ V+AR +L G Sbjct: 283 ILGVRPEHLLPILDGSAAQLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQR 342 Query: 294 ITLVPEHGSTHLFDADS 310 I G H FD S Sbjct: 343 IGASFGAGDVHWFDVKS 359 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 296 bits (759), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/324 (50%), Positives = 208/324 (64%), Gaps = 16/324 (4%) Query: 1 LRMLAGLEEITEGEISIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKK 60 LRM+AGLEEI++G++ IG +N V R +AMVFQ+YALYPHM++ DNMAF L +A K Sbjct: 46 LRMIAGLEEISDGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGK 105 Query: 61 DKSFIQQQVKKAAEILGLTTLLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD 120 K+ I V+ AA+IL + LL+R PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLD Sbjct: 106 SKAEIDAAVQHAAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLD 165 Query: 121 AKLRVQMRTEIKELHQRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRP 180 A LRV+MR E +LH LKTT +YVTHDQIEAMT+AD+IVV+ +G +EQ G P +LY P Sbjct: 166 AALRVKMRLEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHP 225 Query: 181 ANIFVAGFIGSPAMNFIPATLRRNADKAEVEFADGTRLPAPYAHRGLDGVD------GQR 234 AN FVAGFIGSP MNFI T+ A ++ ADG ++ P VD GQ+ Sbjct: 226 ANRFVAGFIGSPKMNFIDGTV------AAIQ-ADGVQVQLPGGGLQWAAVDGSTLQVGQK 278 Query: 235 VVYGVRPEHLSIGPAGSGMNTKVVVVEPTGADTEVYARFSDTSLTSIFR--ERHDFSAGD 292 V GVRPEHL+I + + + +E G + +YA + + I R + D G Sbjct: 279 VTLGVRPEHLNIAQGQAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGS 338 Query: 293 TITLVPEHGSTHLFDADSGKTLAR 316 + L + HLF AD G+ L R Sbjct: 339 VLPLAADPARCHLFGAD-GQALPR 361 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 287 bits (735), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 164/320 (51%), Positives = 205/320 (64%), Gaps = 8/320 (2%) Query: 1 LRMLAGLEEITEGEISIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKK 60 LRML GLEEI+ GE++IGG VVN++ P +R IAMVFQ+YALYPHM V NMAF L +A Sbjct: 47 LRMLCGLEEISGGELAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGN 106 Query: 61 DKSFIQQQVKKAAEILGLTTLLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD 120 KS I +++ AA IL + LL+R PR+LSGGQRQRVA+GRAIVR P++FLFDEPLSNLD Sbjct: 107 SKSDIDARIRHAAAILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLD 166 Query: 121 AKLRVQMRTEIKELHQRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRP 180 A LRVQ R EI +LH++L T VYVTHDQ+EAMT+ D+IVVM +G ++Q G PLELY +P Sbjct: 167 AALRVQTRLEIAKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQP 226 Query: 181 ANIFVAGFIGSPAMNFIPATLRRNADKA-EVEFADGTRLPAPYAHRGLDGVDGQRVVYGV 239 N+FVAGFIGSP MNF + R D +VE A G RL A G+ G V G+ Sbjct: 227 QNLFVAGFIGSPKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGV--TPGAAVTLGL 284 Query: 240 RPEHLSIGPA-GSGMNTKVVVVEPTGADTEVYARFSDTSLTSIFR--ERHDFSAGDTITL 296 R E + G G ++ V +VE G +Y D + R + G I L Sbjct: 285 RAEQIREGLGDGQPLHGVVNLVEHLGEANFLYVTL-DGGHDIVVRGDGNRNVDIGQPIAL 343 Query: 297 VPEHGSTHLFDADSGKTLAR 316 + HLFDA G+ L R Sbjct: 344 SVHSHAFHLFDA-QGQALRR 362 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 278 bits (712), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 157/326 (48%), Positives = 214/326 (65%), Gaps = 19/326 (5%) Query: 1 LRMLAGLEEITEGEISIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKK 60 LRM+AGLE+I+ G + IGGTVVN++ ++R++AMVFQNYALYPHM+V DN+AF L K+ Sbjct: 47 LRMIAGLEDISGGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKR 106 Query: 61 DKSFIQQQVKKAAEILGLTTLLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD 120 + I ++V++ A +L L LLER PR +SGGQ+QR A+ RAI++ P VFLFDEPLSNLD Sbjct: 107 PAAEIDRRVREVAALLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLD 166 Query: 121 AKLRVQMRTEIKELHQRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRP 180 AKLR Q+R +IK LHQRL+TT+VYVTHDQ+EAMT+AD++++M+DG + Q G P ELY P Sbjct: 167 AKLRAQLRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYP 226 Query: 181 ANIFVAGFIGSPAMNFIPATLRRNADKAEVEFADGTRLPAPYAHRGLDGVDGQR------ 234 N+F AGFIG+PAMNF+ T++R + +E A + L G R Sbjct: 227 RNLFAAGFIGTPAMNFLSGTVQRQDGQLFIETA--------HQRWALTGERFSRLRHAMA 278 Query: 235 VVYGVRPEHLSIG----PAGS-GMNTKVVVVEPTGADTEVYARFSDTSLTSIFRERHDFS 289 V VRP+H+ I PA S V +VE GAD + R D +LT++ Sbjct: 279 VKLAVRPDHVRIAGEREPAASLTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQ 338 Query: 290 AGDTITLVPEHGSTHLFDADSGKTLA 315 G T+TL + H+FD +SG+ L+ Sbjct: 339 PGATLTLALDQHELHVFDVESGENLS 364 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 924,297 Number of extensions: 39059 Number of successful extensions: 357 Number of sequences better than 1.0e-08: 95 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 100 Length of query: 317 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 232 Effective length of database: 1,217,395 Effective search space: 282435640 Effective search space used: 282435640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)