BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0071.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312630|ref|YP_003776722.1| hypothetical protein Hsero_3333...   544   e-156
gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport pr...    55   9e-09

>gi|300312630|ref|YP_003776722.1| hypothetical protein Hsero_3333
           [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score =  544 bits (1401), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/323 (82%), Positives = 297/323 (91%), Gaps = 3/323 (0%)

Query: 5   RRNLLKTVIA---AAAVLSFGAAHAAWPDRPVTLVVPWGAGGGTDATARIIGALLEKELG 61
           RR +LK+++A   A +VL+   A AAWP+RPVTLVVPWGAGGGTDATARIIGALLEK+LG
Sbjct: 17  RRTVLKSLMAGTVALSVLAAPCAFAAWPERPVTLVVPWGAGGGTDATARIIGALLEKDLG 76

Query: 62  QPVNVVNRTGGNGVVGHQAIAGAAPDGYTIGLATVEIAMMHHQGLTQLSYKNYTPIALMN 121
           QPVNVVNRTGGNG VGHQAIA AAPDGYTIG+ATVEI+MMHHQGLT+L+ +++TP+ALMN
Sbjct: 77  QPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMMHHQGLTKLTPRDFTPLALMN 136

Query: 122 FDPAALTVSAESPYKTFDDLLKAVKANPGKLKASGTGQGGIWHLGLAGMLSDLKLEPTAV 181
           FDPAALTVS +SPYK+FDDLLKA+KANPGKLKASGTGQGGIWHLGLAGML+DLK+ P AV
Sbjct: 137 FDPAALTVSHDSPYKSFDDLLKAIKANPGKLKASGTGQGGIWHLGLAGMLNDLKVAPNAV 196

Query: 182 RFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKARPLVIMANAPAALYPKVPTLK 241
           RFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKA PLV+MAN PAALYPKVPTLK
Sbjct: 197 RFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKAVPLVVMANEPAALYPKVPTLK 256

Query: 242 SLTGSNWTIGAWRGIVAPRNLPADIQTRLAGHLQKIYNSKEYKDFMGGRGFGTMYADSAE 301
           SLTGS WT GAWRGIVAP+ LPA++QTRL+  L+KIY SK+YKDFM GRGFG MYADSAE
Sbjct: 257 SLTGSGWTNGAWRGIVAPKGLPAEVQTRLSASLKKIYESKDYKDFMSGRGFGVMYADSAE 316

Query: 302 FGKFMEKSDSDMGQILKTLGMAK 324
           FGKFM+KSD+DMG ILKTLGMA+
Sbjct: 317 FGKFMDKSDADMGAILKTLGMAR 339


>gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 14/203 (6%)

Query: 35  LVVPWGAGGGTDATARIIGALLEKELGQP--VNVVNRTGGNGVVGHQAIAGAAPDGYTIG 92
            +VP   GGG DA+ +++  ++++E G+P  + +    GG G V   ++      G    
Sbjct: 27  CIVPAKPGGGMDASCKLLQRVMQEE-GEPRSLKLSYLPGGIGAVAWSSVVSQRRGGPDTL 85

Query: 93  LATVEIAMMHHQGLTQLSYKNYTP-----IALMNFDPAALTVSAESPYKTFDDLLKAVKA 147
           +A    +++   GL Q  Y    P     +A +  D   + V +++P++    LL+A++ 
Sbjct: 86  VAFSGGSLL---GLAQGKYGKAVPDDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLQAIRR 142

Query: 148 NPGKLKA--SGTGQGGIWHLGLAGMLSDLKLEPTAVRFVPSNGAAPAMVDLAAGGVDIVA 205
           +P  +    SGT     W L +A +     + P   RFV   G   +   L AG V +++
Sbjct: 143 DPSAVTIGLSGTVGSQDW-LKMALLGQRAGIVPRQFRFVALEGGGDSFAALQAGHVQVIS 201

Query: 206 ASLPEARSLIDAGKARPLVIMAN 228
               EA   +  GK R L +++ 
Sbjct: 202 GDASEAAYFMAEGKVRVLAVLSE 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,114,961
Number of extensions: 51104
Number of successful extensions: 196
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)