BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0069.p
         (497 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312628|ref|YP_003776720.1| transmembrane protein [Herbaspi...   842   0.0  

>gi|300312628|ref|YP_003776720.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/493 (89%), Positives = 471/493 (95%)

Query: 1   MLANIYTAFGLVFDPYVLAVILGSSMFGLFMGAIPGLSATMAVALLVPVTFFMPPVPAVA 60
           M ANIY AFG+VFDPYVLAVILGSS+FGLFMGA+PGLSATMAVALLVPVTFFMPPVPA+A
Sbjct: 1   MFANIYAAFGMVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIA 60

Query: 61  AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTKKGQGEIALGASLVFSAVGGL 120
           AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMT KGQGEIALGASLVFS +GGL
Sbjct: 61  AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGL 120

Query: 121 FGTFVLILAAPVLAELALKFSSFEYFWLVLMGLTCAIFIASDNALKGFVSLFIGMFIASI 180
           FGTFVLILAAP LAELALKFSSFEYFWLVL+GLTCAIFIASDN LKGFVSLF+GMFIASI
Sbjct: 121 FGTFVLILAAPALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIASI 180

Query: 181 GMGNPAGVPRFTFDNADLLSGVSLVPLMVGMFAMSEVLRYAVSKDQAMTIPDGKVGNVFK 240
           GMGNPAG PRFTFD  DLL GVSLVPLMVGMFAMSEVLR+AVS+D +M + + +VGNVFK
Sbjct: 181 GMGNPAGAPRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDFSMKVAESRVGNVFK 240

Query: 241 GMWALTVKYPKSILRGSVLGTLVGILPGAGADIAAWMSYAMSKKMSKEPEKFGTGHPEGI 300
           GMW L +KYPKS+LRGSVLGTLVG LPGAGADIAAWMSYAMSKK+SKEPEKFGTGHPEGI
Sbjct: 241 GMWGLMIKYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKKLSKEPEKFGTGHPEGI 300

Query: 301 VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVENPVSMYAIFI 360
           VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVENPVSMYAIFI
Sbjct: 301 VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVENPVSMYAIFI 360

Query: 361 VFILANLLMLPLGYWCIKVSKRILGVPRNLLMPLILLFCIVGSYATNNSVSDVGIMLVFG 420
           VFILANLLMLPLG+WCIK++KRIL +PR +LMPLILLFCIVGSYATNNSV+DVGIMLVFG
Sbjct: 361 VFILANLLMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFG 420

Query: 421 LLAYLMEENGFPVAPAVLGVVLGGMLEEHFVTSMIKADGEFLAFFNRPIAGTLGVVTILL 480
           LLAY+MEENGFPVAPAVLGVVLGGMLEEHFVTSMIKADG+FLAFF RPIAGTLGV+T+LL
Sbjct: 421 LLAYVMEENGFPVAPAVLGVVLGGMLEEHFVTSMIKADGQFLAFFERPIAGTLGVITLLL 480

Query: 481 WLLPLVMRGLRKK 493
           WLLPL ++ +R+K
Sbjct: 481 WLLPLALKLVRRK 493


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.142    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,459,904
Number of extensions: 59775
Number of successful extensions: 287
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 408
Effective length of database: 1,198,455
Effective search space: 488969640
Effective search space used: 488969640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)