BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0067.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312627|ref|YP_003776719.1| malate/L-lactate dehydrogenase ...   280   5e-77

>gi|300312627|ref|YP_003776719.1| malate/L-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  280 bits (715), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 136/164 (82%), Positives = 144/164 (87%)

Query: 1   MSNRLHKAGQQFEEEWLLDAQGNASRDPAVFAADPPGTILPLGGLSAGHKGFGLAVLIEA 60
           MSNRLHKAG+QFEEEWL+D  G+ SRDPAV +A PPGTILPLGGLSAGHKGFGLAVLIEA
Sbjct: 193 MSNRLHKAGKQFEEEWLIDGAGHPSRDPAVLSATPPGTILPLGGLSAGHKGFGLAVLIEA 252

Query: 61  LTGGLSGFGRADPPAGWGATVFMSLYDPAAFGGEAAFKRQMDHIAEACRNNPPRPGVEKV 120
           LTGGLSGFGRADP AGWGATVFMSLYDP+AFGGE  FKRQMDHIA+ACR NPPRPGV +V
Sbjct: 253 LTGGLSGFGRADPAAGWGATVFMSLYDPSAFGGEQDFKRQMDHIAQACRANPPRPGVGQV 312

Query: 121 RMPGDRGMARRAQQLEQGVALHPTIAPGLREAAQQYGLSFPAAL 164
           RMPGDRGM RRA+QL QGV LHPTIAP LREA   Y L FPA L
Sbjct: 313 RMPGDRGMQRRAEQLAQGVTLHPTIAPMLREAGAAYDLEFPATL 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 668,533
Number of extensions: 31226
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)