BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0066.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312626|ref|YP_003776718.1| GntR family transcription regul...   207   4e-55
gi|300309587|ref|YP_003773679.1| GntR family transcription regul...    91   9e-20

>gi|300312626|ref|YP_003776718.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  207 bits (527), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 111/130 (85%)

Query: 1   MLEGEVAYAAAKNGKKAQIDAIEEAFQQMIENTSAGANPLEADRLFHIRVAEATGNSVLV 60
           M+EGEVAYAAA++G K QI A+EEA+  MI N  AG +PLEADRLFHIR+AEATGNSVLV
Sbjct: 101 MIEGEVAYAAAQHGSKQQIAAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLV 160

Query: 61  GLVTQLFDARLGPLFDRLHSHFDTIEVWNDAIEEHSRVMKALRARDPEMARQAMRRHMDI 120
           GLVTQLFDARLGPLF RLHSHFD   VW +AI+EH+ VM+ALR R+PE AR AMRRHMDI
Sbjct: 161 GLVTQLFDARLGPLFKRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDI 220

Query: 121 AFKRYSASLV 130
           AF RYSA+L+
Sbjct: 221 AFTRYSANLI 230


>gi|300309587|ref|YP_003773679.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 90.5 bits (223), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%)

Query: 1   MLEGEVAYAAAKNGKKAQIDAIEEAFQQMIENTSAGANPLEADRLFHIRVAEATGNSVLV 60
           + EG +    A   K   I A+   +  M     AG +P   DR FHIR+A  TGN VLV
Sbjct: 116 IFEGAIVALVAPLAKPRDIKALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLV 175

Query: 61  GLVTQLFDARLGPLFDRLHSHFDTIEVWNDAIEEHSRVMKALRARDPEMARQAMRRHMDI 120
             V +L+D R  P+  +L  H++  + W  A+ EH  +++A+ ARD   A+ AM+RH+ +
Sbjct: 176 QTVARLYDERQDPISAKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKM 235

Query: 121 AFKRYSASLV 130
           + KR  +++ 
Sbjct: 236 SLKRTMSTMT 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 531,710
Number of extensions: 19898
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)