BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0065.p (347 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312625|ref|YP_003776717.1| transmembrane protein [Herbaspi... 141 7e-35 gi|300310708|ref|YP_003774800.1| cell wall invasion-associated h... 97 3e-21 gi|300312077|ref|YP_003776169.1| response regulator containing a... 73 3e-14 gi|300312431|ref|YP_003776523.1| two component LuxR family trans... 68 1e-12 gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 65 6e-12 >gi|300312625|ref|YP_003776717.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 141 bits (356), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 63/74 (85%), Positives = 68/74 (91%) Query: 274 ADMARQGRQIDKSNLRPGDLVFFNTLNRPFSHVGIYIGDGRFVHAPSGNGKVHISRMDNP 333 AD+ARQGRQID S LR GDLVFFNT+NRPFSHVGIY+GDGRFVHAPS NGKVHI+RMDNP Sbjct: 116 ADIARQGRQIDPSQLRAGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNP 175 Query: 334 YFAPRFEMARAYFN 347 YF+ RFEMAR YFN Sbjct: 176 YFSRRFEMARTYFN 189 Score = 92.0 bits (227), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/110 (50%), Positives = 71/110 (64%), Gaps = 4/110 (3%) Query: 1 MRSLLSSNPLHALAACCIAVLLTACGSAPMRAPEASTPTPTPTDIRSEA----ATEHGSE 56 MR ++ + L LAA C AV +A P A P +S+A ATE+G+E Sbjct: 10 MRMAVAPSCLSPLAARCTAVCAALVLAACSTTPTAPPIERLPGAPQSQAPALPATENGNE 69 Query: 57 IAIYALDMIGTGYRFGGKNPDAGFDCSGMVSYIFNRAAGLKLSGSAADMA 106 +A+YAL +I TGYRFGGKNP AG DCSGMVSYIF +AA ++SGSAAD+A Sbjct: 70 VALYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIA 119 >gi|300310708|ref|YP_003774800.1| cell wall invasion-associated hydrolase [Herbaspirillum seropedicae SmR1] Length = 200 Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 43/80 (53%), Positives = 56/80 (70%) Query: 264 APGTPDRQIXADMARQGRQIDKSNLRPGDLVFFNTLNRPFSHVGIYIGDGRFVHAPSGNG 323 A GT + +++R G +I K NL+PGDLVF+NTL R FSHVGIY+GDG+F+H+PS G Sbjct: 111 AWGTDLPRTSLEISRVGEKIGKDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGG 170 Query: 324 KVHISRMDNPYFAPRFEMAR 343 +V I MD Y+ RF AR Sbjct: 171 QVRIESMDESYWKKRFNGAR 190 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 7/73 (9%) Query: 33 PEASTPTP----TPTDI---RSEAATEHGSEIAIYALDMIGTGYRFGGKNPDAGFDCSGM 85 P+A++P + T++ R + T SE+A AL M+G YR+GG +PD G DCSG+ Sbjct: 44 PQATSPQAQQLISKTNLAIARLQDITNRASELATQALAMLGINYRYGGNSPDTGLDCSGL 103 Query: 86 VSYIFNRAAGLKL 98 V Y+F A G L Sbjct: 104 VRYVFKEAWGTDL 116 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 77/133 (57%) Query: 126 SIHVAIVEDDPSFRDALSKALEATPDMRLANIAGTRAEGLAMLQGPPADVLLVDLGLPDG 185 +I V I +D R+ L + + D+ +A A E + + + DVLL+D+ LPD Sbjct: 8 AIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDR 67 Query: 186 SGIDVIHAAILRWPGCNIMVSTNFGDETHVMRSIEAGAAGYLLKDSSPAKIVDEIRSLAS 245 +GID++ P +++ + ++ + +R+++AGAAG+L K ++PA+++ IR AS Sbjct: 68 NGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAAS 127 Query: 246 GGSPISPIIARQV 258 G +SP +A+++ Sbjct: 128 GRKYVSPSLAQEL 140 >gi|300312431|ref|YP_003776523.1| two component LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 5/168 (2%) Query: 95 GLKLSGSAADMASYNSGAMSSTPDIPTVAPPSIHVAIVEDDPSFRDALSKALEATPDMRL 154 G++ + D +MSST I T+A + +A+++D R L+ L PD+ + Sbjct: 18 GMRPASRQHDRKRGRDSSMSST--IWTLAS-RMRIALLDDHAVVRYGLAARLAEEPDLEV 74 Query: 155 ANIAGTRAEGLAMLQGPPADVLLVD--LGLPDGSGIDVIHAAILRWPGCNIMVSTNFGDE 212 T E + L+ PAD+LL+D LG D G+++I A +R+P I+V++ + Sbjct: 75 VGSFATSKELMTALRASPADLLLIDYSLGSNDIDGLNLIRALRVRFPRSKILVTSAHNNP 134 Query: 213 THVMRSIEAGAAGYLLKDSSPAKIVDEIRSLASGGSPISPIIARQVLA 260 V +++AGA G++ K ++V IR+++ G ++ +AR++ A Sbjct: 135 ATVALAMKAGARGFVGKSQELGELVQAIRTVSVGREYLNAAMARELTA 182 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 16/176 (9%) Query: 129 VAIVEDDPSFRDALSKALEATPDMRLANIAGTRAEGLAMLQGPPADVLLVDLGLPDGSGI 188 + +++D P RD L LE P + + AG E LA D+ L+D+ + +GI Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 Query: 189 DVIHAAILRWPGCNIMVSTNFGDETHVMRSIEAGAAGYLLKDSSPAKIVDEIRSLASGGS 248 ++ R P +++ + +VM+SI+AGA GY+LKD+ IV I ++ SGG Sbjct: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 Query: 249 PISPIIARQV----------------LARHGAPGTPDRQIXADMARQGRQIDKSNL 288 S +ARQ+ + H A G ++QI ++ R ++ L Sbjct: 134 YYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRL 189 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,088,747 Number of extensions: 45083 Number of successful extensions: 221 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 231 Number of HSP's successfully gapped: 10 Length of query: 347 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 261 Effective length of database: 1,212,660 Effective search space: 316504260 Effective search space used: 316504260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)